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11-0656-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14964421 [Map]; Strand: w
      • AT4G30700.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0656-1 - 5-prime edge 
    GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCN TATCATNGTG TTCCANANGA NGGNGNCTTT 
    CTNANGCNTN NTGNCGAACA NCTTCCTAGC ATNTTCAGAC GTCANCCAAA 
    ACTTGAAGNA CATCTTANCA AGTGNTAGAC CCAAGCNGCA NCTTCTAGAG 
    TCACACCCAT CAACAGACCG CTTGACCATG AATAACACGG CCAGCTCTGT 
    CGTCACGAAA CCCAGAAGCA GCCGAGATAG CGAAGGCGTA GGTGGAGCTG 
    TTGGGCTTGA GATCAGTGGA TTTCCTTAGA TGAGCGAACA CAGAGAGCGA 
    AGAGTGAGGT GATTCGTTGA CGGAGAAGCC ACGCATGAGG ACGTTGAAAA 
    GGAAAACGTC AGGTCTTTGG ACGGAGAGGA AAATGTCGCG TGCGTAGTAA 
    ATGGCGCCGA GGTCGGAGAG TCGTTGAGTA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14964423 [Map]; Strand: w
      • AT4G30700.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0656-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    TTGATATCTG GCTACCGAAA GAATGAAATG TATGTGGAAT CTATTCAGGT 
    TTTCAGGGAT TTGATCAATG AGAGCTGTAC CCGTTTGGAC ACTACAACTC 
    TGCTTGATAT TCTTCCCGCT GTTGCAGAGT TGCAGGAGCN TGAGACTCGG 
    CATGCAAATC CATAGTCTTG CTACAAAAAC TGGGTGCTAC TCCCACGATT 
    ATGTTCTTAC TGGTTTCATC TCACTATNAC TCCAAAGNTG GTGGAAAGAT 
    TAAGATGGGA AGTGCTCTGT TTCGTGAGTT TCGTAACCAN ATATAGTAGC 
    TTACAATGCA ATGATTCATG GGGTCACATN CAATGGAAAG ACTGAGCTCT 
    TTTTAANCCC TGGTTTAAAG AACCTGATGG TTNTCAAGGA ACCAAGGGTG 
    ANGNCAANCN CCTTGGGGAA NCTGGGCCCC TGGCTNTGGG NNNNCCTAAG 
    CCNTNTTTAN TNCCCANNCN TGGGTACCGN GTGGAAACCA AATNCCCGGN 
    NNAAGCNTTN GGNNNAANCC CNGNTNANNN CCGGGNTTTT NGNNAAATTG 
    AANGNNANNA AAATANCCCN GNAAANTNNC NNNCCNGGGC CNNNNNNNCC 
    CNNNGGCCTT

AT4G30700.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33990.1); Has 41014 Blast hits to 14356 proteins in 276 species: Archae - 0; Bacteria - 8; Metazoa - 149; Fungi - 107; Plants - 40176; Viruses - 0; Other Eukaryotes - 574 (source: NCBI BLink).
Link
InterPro Scan - TAIR