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11-0656-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14964421 [Map]; Strand: w
      • AT4G30700.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0656-1 - 5-prime edge
    GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCN TATCATNGTG TTCCANANGA NGGNGNCTTT
    CTNANGCNTN NTGNCGAACA NCTTCCTAGC ATNTTCAGAC GTCANCCAAA
    ACTTGAAGNA CATCTTANCA AGTGNTAGAC CCAAGCNGCA NCTTCTAGAG
    TCACACCCAT CAACAGACCG CTTGACCATG AATAACACGG CCAGCTCTGT
    CGTCACGAAA CCCAGAAGCA GCCGAGATAG CGAAGGCGTA GGTGGAGCTG
    TTGGGCTTGA GATCAGTGGA TTTCCTTAGA TGAGCGAACA CAGAGAGCGA
    AGAGTGAGGT GATTCGTTGA CGGAGAAGCC ACGCATGAGG ACGTTGAAAA
    GGAAAACGTC AGGTCTTTGG ACGGAGAGGA AAATGTCGCG TGCGTAGTAA
    ATGGCGCCGA GGTCGGAGAG TCGTTGAGTA AGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14964423 [Map]; Strand: w
      • AT4G30700.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0656-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    TTGATATCTG GCTACCGAAA GAATGAAATG TATGTGGAAT CTATTCAGGT
    TTTCAGGGAT TTGATCAATG AGAGCTGTAC CCGTTTGGAC ACTACAACTC
    TGCTTGATAT TCTTCCCGCT GTTGCAGAGT TGCAGGAGCN TGAGACTCGG
    CATGCAAATC CATAGTCTTG CTACAAAAAC TGGGTGCTAC TCCCACGATT
    ATGTTCTTAC TGGTTTCATC TCACTATNAC TCCAAAGNTG GTGGAAAGAT
    TAAGATGGGA AGTGCTCTGT TTCGTGAGTT TCGTAACCAN ATATAGTAGC
    TTACAATGCA ATGATTCATG GGGTCACATN CAATGGAAAG ACTGAGCTCT
    TTTTAANCCC TGGTTTAAAG AACCTGATGG TTNTCAAGGA ACCAAGGGTG
    ANGNCAANCN CCTTGGGGAA NCTGGGCCCC TGGCTNTGGG NNNNCCTAAG
    CCNTNTTTAN TNCCCANNCN TGGGTACCGN GTGGAAACCA AATNCCCGGN
    NNAAGCNTTN GGNNNAANCC CNGNTNANNN CCGGGNTTTT NGNNAAATTG
    AANGNNANNA AAATANCCCN GNAAANTNNC NNNCCNGGGC CNNNNNNNCC
    CNNNGGCCTT

AT4G30700.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33990.1); Has 41014 Blast hits to 14356 proteins in 276 species: Archae - 0; Bacteria - 8; Metazoa - 149; Fungi - 107; Plants - 40176; Viruses - 0; Other Eukaryotes - 574 (source: NCBI BLink).
Link
InterPro Scan - TAIR