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11-0674-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19609291 [Map]; Strand: c
      • AT2G47890.1 - [+] show detail - B-box type zinc finger protein with CCT domain
        Distance: 0; Region: exon3 (CDS)
      • AT2G47890.2 - [+] show detail - B-box type zinc finger protein with CCT domain
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 11-0674-1 - 3-prime edge 
    GACACATGAG ATCAACAGTC TTGAGAGGAA CTCTGCTCTC TCTCGCTACA 
    AAGAAAAGAA GAAGTCTCGA AGGTAAACAA GCTAATTTTA AAAGTGAGAC 
    ACCACCAATA GGATTGGGAT TTGAATCATG TGTTGATGAA ACAGGTACGA 
    GAAACACATC AGGTATGAAT CACGCAAGGT TCGTGCAGAA AGCAGGACAA 
    GAATCAGGGG ACGTTTCGCC AAGGCAGCAG ATCCATGAAA GATGATGAGG 
    TTACTTTGAT AATCAAAAAT CTTTTGTATT AATCGAATCA TATAGTGTGT 
    ATGATCAGAT AAGTTTTTGT ATTCTAAGCT

AT2G47890.1

Model type
Protein coding
Short Description
B-box type zinc finger protein with CCT domain
Computational Description
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 3246 Blast hits to 2264 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3153; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47890.2

Model type
Protein coding
Short Description
B-box type zinc finger protein with CCT domain
Computational Description
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR