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11-0676-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 353183 [Map]; Strand: w
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 3004; Region: intergenic
      • AT2G01818.1 - [+] show detail - PLATZ transcription factor family protein
        Distance: 274; Region: intergenic
    Flanking Genome Sequence: 11-0676-1 - 5-prime edge 
    NCTAAAACTA CCACAAAGGA TANGNCCATT TGACATTNNA ANNTGTATCT 
    ATCANTTCAT ACNANAANGC GTTNAGAATA TGAGGGTATC NATNCATNGG 
    GNTCNATGAG TCATTGCCAT GCAAAACTAG TGGGTTCCAG TGAATCAACA 
    CAATCTCATT CTCATGAACC AAAAAAACTT TTTGGGCCCA TATCTCTCTT 
    TTCTCCATGA TGAATAATAA ATAAATCACT CATACATACG CATTACACAT 
    CACTATTATT ATTTTTCTTT GTATCACTAT TTTTTTAGCC TATTAGCAAC 
    AAAAAAAAAA NNTNNCNGTT GGNNATNAAA ACTNATNAAC TTTTTTTTGG 
    GNCNTNAAAN CTNNTNANNT TTAAAAAAAA ANNTGGNTNN CCGATTTAAT 
    NTNAAAANNT TTNNTNCNTA NANAAAANCC CCTTANGGTN GGGNTTNGNN 
    GACAAAATNC CNAAAAAAAT NATTAAAAGG GNAATTTTNA AAAAATCCCT 
    TTTTNTTNGN GNTTTCNAAN NAGGGGGCNA AAGNAAAAAN NNCCCNNNAA 
    ANCTNNAAAA TTTTNNNAAN CNNNNNNGNG GGNCAANGNN CCCAANNTTT 
    TNNNTTNNAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 346968 [Map]; Strand: w
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: -569; Region: promoter
    Flanking Genome Sequence: 11-0676-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTGTTATCTC 
    CTATGAGGCA ACTGCTGTTG TATAAATACC TCTCAAATTC TCAAATTCTA 
    CTCCGATACT AAAAACTTGA ATAGTAATCG TTTTCGTATA TGGGAGTAAC 
    AAATCAAGGG AAACCAAAGA GAAGCTAATG TTGGATAATG GAGAAAATCA 
    AATCATTATC TTCTGTTCTG TCTGCTCACA TAAAGATAAA CAATGTGAAA 
    TCTATTTCGT TGTCCGCGCA TAATATCGGG AAGGTTTAGA ATGTTATATC 
    ATTAGTAAAT TCCCAATGTT CACACAGTTA CAAAATAGTT ACAGTTTGCT 
    AAATGTCATC TTCATCTCCA TCTTCCCTTT AGTTTAACTA ATAAGAATAC 
    AAAAAAAATA AAAAAATTAT AAGAAACAAA TGTGATGTTT TAAAATTTGA 
    TTAAGCT

AT2G01810.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 637 Blast hits to 622 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 216; Plants - 250; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01818.1

Model type
Protein coding
Short Description
PLATZ transcription factor family protein
Computational Description
PLATZ transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT3G60670.1); Has 397 Blast hits to 397 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 397; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR