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11-0697-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23171514 [Map]; Strand: w
      • AT5G57181.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 354; Region: intergenic
      • AT5G57190.1 - [+] show detail - phosphatidylserine decarboxylase 2
        Distance: 17; Region: intergenic
    Flanking Genome Sequence: 11-0697-1 - 5-prime edge 
    TNNACAANGA TCTGANGGAC AGAGGNCANN NGAACATTGA ANGCAANNTA 
    TNANNGCTAN GGATNCNAGG CACTCGGGGN AANGATGGAT AAANAANNGN 
    GGNCCTAGNC CANGCCCNNG NGNANACANC TAATNGCATT CCAACACTCA 
    CTAATGTCTC TAAAGACCTA CCACTGTTAA CCAAGAGATC ATTATCGATC 
    CGGATCGCGT CCTGCATAAT TCAAATGGAA GGTTCATATT GAAAGAAAAC 
    AACAGTGAAG ATATCATTTT AAAAGCATAA AACTGTTCTT AAGATTTTAA 
    GATTAAGATA TAATAAGTCA CTAACCTTTT CAAAGACACA TATAACTGTG 
    CTTCCACCAA ACGAAAAATA ACCAAGCTGC AAGATAAATT GAAGTTAGGA 
    AATATTCTCT TGAAGTGTTT CTTATGAAAA GTTGAAACTG CTTACTTCAT 
    CTCCTTTCTT CACATGCTCT CCTTCCTTTC TAACAAAATT TATGCTACCA 
    ACCATTGTTG CACCGATTGC AACAAAAGCA ACCTGTTACA TACTTATTAG 
    CTAACCTTGA ATTTATACAG NACACACTAT NATTNTGATC CATTNGNAAA 
    CNGGATTNAN NATNTAACCT TTCCAAANNN NNNNNGNGAN ATAANNNNAA 
    NNGNNNNNNN NTTTTNNNNG NAANNATTAN NNNNNNNGNN GNNNCCNNAN 
    NNGGNNNAAN CNATN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23171401 [Map]; Strand: w
      • AT5G57181.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 241; Region: intergenic
      • AT5G57190.1 - [+] show detail - phosphatidylserine decarboxylase 2
        Distance: 130; Region: intergenic
    Flanking Genome Sequence: 11-0697-1 - 3-prime edge 
    TCTGTATATA AACCAAACGA TATCTCCTGT ATTATGTATA CAAGTAATGA 
    GCTCAACACA TTCCTTGTGC AGAGAGTTCT GTTTTTGCCA TTCCGTCAAG 
    CCTTGTAAAA TAACACTCGA TTCTTGGTCA AAGATAAAAT GGTATCTAGA 
    AGAAGCTACC ATTCAAAAAT CATATAACAC GTCCTAGAAG CTATTTTTGC 
    CCTTAATTCA ATATGCTTTT TCTCTATAAT GTTTTTATTG GGAAAGGAAA 
    TTTGGCTCGG CAAAAACAGA TATTGAGAGG TATCAATGAT TTGTCACCGG 
    TTTTGATGAC TCAAAGAAGC AATGGGCAAC GAAACAACAG GTGTACAAGG 
    CTGCAACATA GTTTGAGCCA TTGGGATTGG TGAATAATCC ATGTCTTGTT 
    TTTTGCTACT GTTGTTGTTG AGCCAAGTCT CTGACTACAA TTGCTTCTTG 
    AGTCATTAAA ATCTCAAGAG CTCTGTTTCT TCTATTAATA ACAAAAACTT 
    TTATTAGTTT TGATCCCTCA CTTTCTCAAT CAAATCTCCC CCTCATCAAA 
    AAATCTAAAT TATAAACCAA AAGGGACCAT AACTTAAAAG AAACAAAAAA 
    GGAGGGTGCC AAAATTTTAN AAACAAAAAT AAAACANGGA ATAANCNNNN 
    GATNNAAAAA AANGATANNA NAAATCTAGG NTCTTTTATC CTNGNNNTCT 
    TNGNCCCTNG GAGGGCTCTC NTTGGGCCTN

AT5G57181.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57190.1

Model type
Protein coding
Short Description
phosphatidylserine decarboxylase 2
Curator Summary
Encodes the minor form of the two non-mitochondrail phosphatidylserine decarboxylase. The gene expression level is very low. Located at the tonoplast.
Computational Description
phosphatidylserine decarboxylase 2 (PSD2); FUNCTIONS IN: phosphatidylserine decarboxylase activity; INVOLVED IN: N-terminal protein myristoylation, phospholipid biosynthetic process; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Phosphatidylserine decarboxylase-related (InterPro:IPR003817), Calcium-binding EF-hand (InterPro:IPR002048), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), EF-hand-like domain (InterPro:IPR011992), Phosphatidylserine decarboxylase (InterPro:IPR005221); BEST Arabidopsis thaliana protein match is: phosphatidylserine decarboxylase 3 (TAIR:AT4G25970.1); Has 3739 Blast hits to 3658 proteins in 1335 species: Archae - 3; Bacteria - 2361; Metazoa - 260; Fungi - 489; Plants - 195; Viruses - 0; Other Eukaryotes - 431 (source: NCBI BLink).
Link
InterPro Scan - TAIR