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11-0697-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23171514 [Map]; Strand: w
      • AT5G57181.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 354; Region: intergenic
      • AT5G57190.1 - [+] show detail - phosphatidylserine decarboxylase 2
        Distance: 17; Region: intergenic
    Flanking Genome Sequence: 11-0697-1 - 5-prime edge
    TNNACAANGA TCTGANGGAC AGAGGNCANN NGAACATTGA ANGCAANNTA 
    TNANNGCTAN GGATNCNAGG CACTCGGGGN AANGATGGAT AAANAANNGN
    GGNCCTAGNC CANGCCCNNG NGNANACANC TAATNGCATT CCAACACTCA
    CTAATGTCTC TAAAGACCTA CCACTGTTAA CCAAGAGATC ATTATCGATC
    CGGATCGCGT CCTGCATAAT TCAAATGGAA GGTTCATATT GAAAGAAAAC
    AACAGTGAAG ATATCATTTT AAAAGCATAA AACTGTTCTT AAGATTTTAA
    GATTAAGATA TAATAAGTCA CTAACCTTTT CAAAGACACA TATAACTGTG
    CTTCCACCAA ACGAAAAATA ACCAAGCTGC AAGATAAATT GAAGTTAGGA
    AATATTCTCT TGAAGTGTTT CTTATGAAAA GTTGAAACTG CTTACTTCAT
    CTCCTTTCTT CACATGCTCT CCTTCCTTTC TAACAAAATT TATGCTACCA
    ACCATTGTTG CACCGATTGC AACAAAAGCA ACCTGTTACA TACTTATTAG
    CTAACCTTGA ATTTATACAG NACACACTAT NATTNTGATC CATTNGNAAA
    CNGGATTNAN NATNTAACCT TTCCAAANNN NNNNNGNGAN ATAANNNNAA
    NNGNNNNNNN NTTTTNNNNG NAANNATTAN NNNNNNNGNN GNNNCCNNAN
    NNGGNNNAAN CNATN
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23171401 [Map]; Strand: w
      • AT5G57181.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 241; Region: intergenic
      • AT5G57190.1 - [+] show detail - phosphatidylserine decarboxylase 2
        Distance: 130; Region: intergenic
    Flanking Genome Sequence: 11-0697-1 - 3-prime edge
    TCTGTATATA AACCAAACGA TATCTCCTGT ATTATGTATA CAAGTAATGA 
    GCTCAACACA TTCCTTGTGC AGAGAGTTCT GTTTTTGCCA TTCCGTCAAG
    CCTTGTAAAA TAACACTCGA TTCTTGGTCA AAGATAAAAT GGTATCTAGA
    AGAAGCTACC ATTCAAAAAT CATATAACAC GTCCTAGAAG CTATTTTTGC
    CCTTAATTCA ATATGCTTTT TCTCTATAAT GTTTTTATTG GGAAAGGAAA
    TTTGGCTCGG CAAAAACAGA TATTGAGAGG TATCAATGAT TTGTCACCGG
    TTTTGATGAC TCAAAGAAGC AATGGGCAAC GAAACAACAG GTGTACAAGG
    CTGCAACATA GTTTGAGCCA TTGGGATTGG TGAATAATCC ATGTCTTGTT
    TTTTGCTACT GTTGTTGTTG AGCCAAGTCT CTGACTACAA TTGCTTCTTG
    AGTCATTAAA ATCTCAAGAG CTCTGTTTCT TCTATTAATA ACAAAAACTT
    TTATTAGTTT TGATCCCTCA CTTTCTCAAT CAAATCTCCC CCTCATCAAA
    AAATCTAAAT TATAAACCAA AAGGGACCAT AACTTAAAAG AAACAAAAAA
    GGAGGGTGCC AAAATTTTAN AAACAAAAAT AAAACANGGA ATAANCNNNN
    GATNNAAAAA AANGATANNA NAAATCTAGG NTCTTTTATC CTNGNNNTCT
    TNGNCCCTNG GAGGGCTCTC NTTGGGCCTN

AT5G57181.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57190.1

Model type
Protein coding
Short Description
phosphatidylserine decarboxylase 2
Curator Summary
Encodes the minor form of the two non-mitochondrail phosphatidylserine decarboxylase. The gene expression level is very low. Located at the tonoplast.
Computational Description
phosphatidylserine decarboxylase 2 (PSD2); FUNCTIONS IN: phosphatidylserine decarboxylase activity; INVOLVED IN: N-terminal protein myristoylation, phospholipid biosynthetic process; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Phosphatidylserine decarboxylase-related (InterPro:IPR003817), Calcium-binding EF-hand (InterPro:IPR002048), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), EF-hand-like domain (InterPro:IPR011992), Phosphatidylserine decarboxylase (InterPro:IPR005221); BEST Arabidopsis thaliana protein match is: phosphatidylserine decarboxylase 3 (TAIR:AT4G25970.1); Has 3739 Blast hits to 3658 proteins in 1335 species: Archae - 3; Bacteria - 2361; Metazoa - 260; Fungi - 489; Plants - 195; Viruses - 0; Other Eukaryotes - 431 (source: NCBI BLink).
Link
InterPro Scan - TAIR