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11-0706-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::sterile)
sepal (PO:0009031)
  • abnormal (PATO:0000460)
    (Flowers::sepal)
vascular leaf (PO:0009025)
  • variegated (PATO:0000335)
    (Leaves::variegated leaves)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8979696 [Map]; Strand: w
      • AT2G20850.1 - [+] show detail - STRUBBELIG-receptor family 1
        Distance: -317; Region: promoter
      • AT2G20860.1 - [+] show detail - lipoic acid synthase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0706-1 - 5-prime edge 
    GTNAAGAGAT GCATTAAGGA CTCCGGCTTG CTCTATANAT NCCNACGNNC 
    NGNGTCNANA TGCTNCTNCG CTTCCTCGGN TGAAACGTTC NGNCACCGTN 
    GCCGCAATCT CCCAANAGNC TCNAGGCTNT TCGAGCCTCG GCCTGGCGAA 
    TGAGTCGCCT TCCCTAACCG ATTTCATCCA CGGCGATACC TATTCGGTGG 
    AAGTTGGAAC CAAAAAGAAA CCTCTCCCGA AACCTAAATG GATGAAGGAA 
    TCAATTCCCG GCGGCGAGAG ATATGTCCAG ATCAAGAAGA AATTGAGAGA 
    CCTTAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8979584 [Map]; Strand: w
      • AT2G20850.1 - [+] show detail - STRUBBELIG-receptor family 1
        Distance: -205; Region: promoter
      • AT2G20860.1 - [+] show detail - lipoic acid synthase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-0706-1 - 3-prime edge 
    TCTCAAACGT CCTGAGAAAA AGTCCCGATT TTGGAGGAAT CTCACCGGTG 
    ACGGTAATGA GTTTAAGGTG ACGATGAACC CTCTTCTTCT ACAAGAAGGT 
    CTCATTTGGG CCTATTGTTT ATAAACTAAA GCCCATTATA TTCCTTATCA 
    TAAATAAATG TAGGCCCATT AAAAGCT

AT2G20850.1

Model type
Protein coding
Short Description
STRUBBELIG-receptor family 1
Computational Description
STRUBBELIG-receptor family 1 (SRF1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 3 (TAIR:AT4G03390.1); Has 150345 Blast hits to 104966 proteins in 4098 species: Archae - 89; Bacteria - 11039; Metazoa - 39266; Fungi - 7103; Plants - 77215; Viruses - 282; Other Eukaryotes - 15351 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G20860.1

Model type
Protein coding
Short Description
lipoic acid synthase 1
Curator Summary
LIP1,Lipoic acid synthase,
Computational Description
LIPOIC ACID SYNTHASE 1 (LIP1); FUNCTIONS IN: lipoic acid synthase activity; INVOLVED IN: lipoic acid biosynthetic process, glycine catabolic process; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Lipoate synthase (InterPro:IPR003698), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: lipoic acid synthase family protein (TAIR:AT5G08415.1); Has 5683 Blast hits to 5683 proteins in 1186 species: Archae - 36; Bacteria - 2370; Metazoa - 113; Fungi - 91; Plants - 53; Viruses - 0; Other Eukaryotes - 3020 (source: NCBI BLink).
Link
InterPro Scan - TAIR