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11-0738-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22340974 [Map]; Strand: c
      • AT5G55055.1 - [+] show detail - pre-tRNA
        Distance: -401; Region: promoter
      • AT5G55056.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -9; Region: promoter
      • AT5G55060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -978; Region: promoter
      • AT5G55060.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -993; Region: promoter
    Flanking Genome Sequence: 11-0738-1 - 5-prime edge 
    TTTTTGAGGA CCGTGGACGA CTTCAGAGAG ACGTAGCTCT TTCCAAAAAG 
    GAAAAAAAAT CATCAAATAA TAAATTGTAA CATAAAAATC TAATGAGGAA 
    AAATAACAAC CTAAAATATT GATGAACATA TCATAAAGTT TTATAACGTC 
    GCTTTTTTCT TAATGTTCAT GTAATGTCTG TCTTTTTGNG AATATATATA 
    GATC

AT5G55055.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Phe (anticodon: GAA)
Link
InterPro Scan - TAIR

AT5G55056.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G55060.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58510.1); Has 223 Blast hits to 218 proteins in 80 species: Archae - 0; Bacteria - 2; Metazoa - 117; Fungi - 6; Plants - 65; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G55060.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58510.1).
Link
InterPro Scan - TAIR