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11-0739-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::low yield)
sporophyte vegetative stage (PO:0007134)
  • abnormal (PATO:0000460)
    (Flowering & Growth::growth defective)

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 658029 [Map]; Strand: c
      • AT1G02910.1 - [+] show detail - tetratricopeptide repeat (TPR)-containing protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0739-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AAGTGGCAGC CATGGCCTTC GTTGCTTAAC TCTCGAGTAA AGGTTCGAGA 
    TGCGGCGGGG GAAATGGCGG TTTAGCGACG GAGCTGTAGC CACAGCCATT 
    CAATTTTCTT CTACGCTTAC GGAAAAAAAA CAAAACTTTT ATCCGCTTTT 
    TATTTCCTCT GTTTTATTTC GGAAATAATA TTTAACTTCC AACTTCTTTG 
    AATATTATCT AGAAACTTAT ATTTGGTACG AATTAGACCC AAAGAAAAAA 
    ACATTGTTGA CTTTGTCACA CAATGACACA AGGTTTGGAA TCGATTAGGA 
    AAACGAAGAA GATTAGTGAT TTGATGAGTA GCATAACTAA GCTGGAGTTG 
    GTGTTAAGAT TAGTGATTGA TGAGTAGCAG ACCTAACTTG GAGTTAGTGT 
    TGTGATATTT TAATAACTGA ATGTGATTCT GTCTAACTAT GAAGTTTAAT 
    ATTCTAATTA AATTGCAAAG CATTAAAAGT CAACAGTCAA TTTCTTCCTT 
    ACAATGGCAA AAATGAAGTC TCAAGTCAGC TTTCAAAAAT TAGAATAATT 
    AAGTCAACTT TCAAGAATGA GATCAACACT AATTTTCTTT TCTTTTTTTT 
    GGTCATAAGA GATCAACACT ACTTATTAGT AGCTAAACTT TAGGCTACCA 
    AATATATTTT TATTATATAT CAAGACTCAT TATTATTGAA GATTACTTTC 
    AANCCAAAAA AAAANCCGGG GGGNCCCCCC CC

AT1G02910.1

Model type
Protein coding
Short Description
tetratricopeptide repeat (TPR)-containing protein
Curator Summary
Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues.
Computational Description
LOW PSII ACCUMULATION1 (LPA1); FUNCTIONS IN: binding; INVOLVED IN: photosystem II oxygen evolving complex assembly; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28740.1); Has 201 Blast hits to 200 proteins in 49 species: Archae - 3; Bacteria - 57; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR