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11-0761-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 316376 [Map]; Strand: c
      • AT3G01910.1 - [+] show detail - sulfite oxidase
        Distance: 0; Region: exon6 (CDS)
      • AT3G01910.2 - [+] show detail - sulfite oxidase
        Distance: 0; Region: exon2 (CDS)
      • AT3G01910.3 - [+] show detail - sulfite oxidase
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 11-0761-1 - 5-prime edge
    CTTGTGGGGA TACCAAAGCT GACTGCTTCT ACCAATTTAG GAGCCAGACA 
    TGTTGAGTTC GTTAGTGNTG ATCGCTGTAA GGTAGATATA TATTAATAAA
    TTCCACCTTT TTATGCTTTG TTATGAATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26447999 [Map]; Strand: w
      • AT5G66170.3 - [+] show detail - sulfurtransferase 18
        Distance: 0; Region: intron1 (CDS)
      • AT5G66170.1 - [+] show detail - sulfurtransferase 18
        Distance: 0; Region: intron1 (CDS)
      • AT5G66170.2 - [+] show detail - sulfurtransferase 18
        Distance: 0; Region: intron1 (CDS)
      • AT5G66180.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: -939; Region: promoter
      • AT5G66180.2 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: -940; Region: promoter
      • AT5G66180.3 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: -956; Region: promoter
    Flanking Genome Sequence: 11-0761-1 - 3-prime edge
    CTCACAATGG CCTCTCCTAA ACTCGTCCTG AGTCCTGCCA TGTGCAAGGA 
    TTTTTCATTA ACAACCGCAA CAGCTGGTAC ATGCATGGTG ATATGATAGA
    ATAGATCAGA AGCTCACCTA ACGTCAAGAT ATTGATGCCC AGACTGGAGG
    AGAGTCTTGG CTTGGCTCAC ATCTACACTA ACAACTTCTT CTGCCTTTGT
    GCTGGAGGAG ATTGATTGAG ACATCTTCTT CTCTACCTCT TCTTGTCAAA
    CAAAAAGATG AAGAAGCT

AT3G01910.1

Model type
Protein coding
Short Description
sulfite oxidase
Curator Summary
Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor. It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum. SO protein has been found in all parts of the plant. The plant SO combines its enzymatic sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite.
Computational Description
sulfite oxidase (SOX); FUNCTIONS IN: sulfite oxidase activity; INVOLVED IN: sulfur metabolic process, response to sulfur dioxide, chlorophyll metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Eukaryotic molybdopterin oxidoreductase (InterPro:IPR008335), Moybdenum cofactor oxidoreductase, dimerisation (InterPro:IPR005066), Oxidoreductase, molybdopterin-binding domain (InterPro:IPR000572); BEST Arabidopsis thaliana protein match is: nitrate reductase 1 (TAIR:AT1G77760.1); Has 4198 Blast hits to 4195 proteins in 919 species: Archae - 144; Bacteria - 2268; Metazoa - 143; Fungi - 280; Plants - 245; Viruses - 0; Other Eukaryotes - 1118 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01910.2

Model type
Protein coding
Short Description
sulfite oxidase
Curator Summary
Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor. It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum. SO protein has been found in all parts of the plant. The plant SO combines its enzymatic sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite.
Computational Description
sulfite oxidase (SOX); FUNCTIONS IN: sulfite oxidase activity; INVOLVED IN: sulfur metabolic process, response to sulfur dioxide, chlorophyll metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Eukaryotic molybdopterin oxidoreductase (InterPro:IPR008335), Moybdenum cofactor oxidoreductase, dimerisation (InterPro:IPR005066), Oxidoreductase, molybdopterin-binding domain (InterPro:IPR000572); BEST Arabidopsis thaliana protein match is: nitrate reductase 1 (TAIR:AT1G77760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01910.3

Model type
Protein coding
Short Description
sulfite oxidase
Curator Summary
Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor. It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum. SO protein has been found in all parts of the plant. The plant SO combines its enzymatic sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite.
Computational Description
sulfite oxidase (SOX); FUNCTIONS IN: sulfite oxidase activity; INVOLVED IN: sulfur metabolic process, response to sulfur dioxide, chlorophyll metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Eukaryotic molybdopterin oxidoreductase (InterPro:IPR008335), Moybdenum cofactor oxidoreductase, dimerisation (InterPro:IPR005066), Oxidoreductase, molybdopterin-binding domain (InterPro:IPR000572); BEST Arabidopsis thaliana protein match is: nitrate reductase 1 (TAIR:AT1G77760.1); Has 3266 Blast hits to 3265 proteins in 737 species: Archae - 124; Bacteria - 1570; Metazoa - 141; Fungi - 268; Plants - 245; Viruses - 0; Other Eukaryotes - 918 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66170.1

Model type
Protein coding
Short Description
sulfurtransferase 18
Curator Summary
Encodes a thiosulfate sulfurtransferase/rhodanese.
Computational Description
sulfurtransferase 18 (STR18); CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G17850.1); Has 200 Blast hits to 200 proteins in 47 species: Archae - 2; Bacteria - 43; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66170.2

Model type
Protein coding
Short Description
sulfurtransferase 18
Curator Summary
Encodes a thiosulfate sulfurtransferase/rhodanese.
Computational Description
sulfurtransferase 18 (STR18); CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G17850.1); Has 1280 Blast hits to 1276 proteins in 450 species: Archae - 27; Bacteria - 889; Metazoa - 24; Fungi - 9; Plants - 170; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66170.3

Model type
Protein coding
Short Description
sulfurtransferase 18
Curator Summary
Encodes a thiosulfate sulfurtransferase/rhodanese.
Computational Description
sulfurtransferase 18 (STR18); FUNCTIONS IN: thiosulfate sulfurtransferase activity; INVOLVED IN: aging; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G17850.1).
Link
InterPro Scan - TAIR

AT5G66180.1

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); Has 8827 Blast hits to 7075 proteins in 2181 species: Archae - 455; Bacteria - 6424; Metazoa - 542; Fungi - 251; Plants - 202; Viruses - 0; Other Eukaryotes - 953 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66180.2

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); Has 2637 Blast hits to 2540 proteins in 1031 species: Archae - 209; Bacteria - 1812; Metazoa - 180; Fungi - 59; Plants - 92; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66180.3

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); Has 8458 Blast hits to 6982 proteins in 2152 species: Archae - 444; Bacteria - 6084; Metazoa - 538; Fungi - 249; Plants - 190; Viruses - 0; Other Eukaryotes - 953 (source: NCBI BLink).
Link
InterPro Scan - TAIR