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11-0769-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2006920 [Map]; Strand: w
      • AT1G06550.1 - [+] show detail - ATP-dependent caseinolytic (Clp) protease/crotonase family protein
        Distance: 0; Region: intron1 (5UTR)
      • AT1G06560.1 - [+] show detail - NOL1/NOP2/sun family protein
        Distance: -695; Region: promoter
    Flanking Genome Sequence: 11-0769-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTT 
    AAAGTTTCTT CATTTCTGAG TCTTTAGCCA TCTATTCGTT GGTTGGAACT 
    TGGAAGAGTA GGATTTTAGT TTGAAATGCT CATTCTCCGA TCATAAAGTT 
    TATATATTTT GAATAGAATT TGTGTTCTTG TTCTTGTGGA TGAAGTAGAG 
    AATAATCTAG GGAGGTTGAA ATTAGATTGT TGCAAGTTCG TGAATATTAG 
    GATTTGTCTC ATTGGGTCTG AAGTTTTGTG GAATTTCTTG ACAGTGTAGT 
    TTGGCAGTTT GAGAGTGTTT TTCATATCCG ACTCTTTCAA ACTGATGGTT 
    GTGACATTTT TGTTGACCAG ATTAGTAAGT TATTGTTGAC GTTTTGAGAA 
    AGCTGGATAT GGCTCAAGAA GGTCAAAACA TCGATGAGCC GGTAATCTCT 
    GCCTTTTTCA GTCTTTTGTA GTGTTTCTCC TCTTCATGAT TCAGTCGTAA 
    ACCATCATCA AAACTTTTGG AATCTGGCAT TCTTACAGGT TGTTATTGGA 
    NAGGAAAAGG GNCTGNNNNA TTGACTACTC TTAACCNCCC NCCNCNNCTG 
    AATGNNNTNT NTNCNNNNGN GGNNTNTTNN NATCTNNNAN CNNAANCNGN 
    NNNNNNNCTC CNCTTNNNNT NTNNNNNNCC

AT1G06550.1

Model type
Protein coding
Short Description
ATP-dependent caseinolytic (Clp) protease/crotonase family protein
Computational Description
ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: 3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity; INVOLVED IN: response to karrikin, fatty acid beta-oxidation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: beta-hydroxyisobutyryl-CoA hydrolase 1 (TAIR:AT5G65940.1); Has 26566 Blast hits to 26556 proteins in 2155 species: Archae - 406; Bacteria - 18031; Metazoa - 1157; Fungi - 686; Plants - 463; Viruses - 0; Other Eukaryotes - 5823 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06560.1

Model type
Protein coding
Short Description
NOL1/NOP2/sun family protein
Computational Description
NOL1/NOP2/sun family protein; FUNCTIONS IN: methyltransferase activity, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26600.1); Has 13569 Blast hits to 8411 proteins in 2331 species: Archae - 604; Bacteria - 9970; Metazoa - 826; Fungi - 418; Plants - 360; Viruses - 0; Other Eukaryotes - 1391 (source: NCBI BLink).
Link
InterPro Scan - TAIR