1. Home
  2. Mutant Lines
  3. 11-0797-1

11-0797-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7888914 [Map]; Strand: c
      • AT5G23420.1 - [+] show detail - high-mobility group box 6
        Distance: 0; Region: intron7 (CDS)
      • AT5G23420.2 - [+] show detail - high-mobility group box 6
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 11-0797-1 - 5-prime edge 
    CTGGAAAGCA ATGATGCTGA TGAGGAAGTA TGTGTTTCAT AATTTATGGG 
    CAGTCTTTCA CTTACTAAAT GAAATCTTTA GTGTTAAGAT GATTCGATGA 
    CTTTTTCAGG AGGAAGATAA GGAGAAGCAA TCTGATGATG TTGATGATGC 
    TGAGGAGGAA CAAGCTGACG ATGATGATGA AGTTGAGGAG AAAGAAGTTG 
    AGAACACAGA TGATGACAAG AAAGAAGCTG AAGGTAAAGA AGAGGAGGAA 
    GAAGAGATTT TGGATGACTA CTAGAAATGA TATGCTCAAC CTTGTGGGTC 
    TAGTCTTACT GAAATCGGTT TATCTCTAAT CGTTGCGATG CATTGTAAAT 
    GAAGCCTTTA TTAGTGAAAG TAGTTTATTT GAAGTTAAGT TGTGAGCAAG 
    TGTTTTTTTT GTAGTTCACT GAAATGGTAA TGCCTTTTGT TTAAACAAGT 
    AATGAAGCT

AT5G23420.1

Model type
Protein coding
Short Description
high-mobility group box 6
Curator Summary
Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.
Computational Description
high-mobility group box 6 (HMGB6); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMG-box (high mobility group) DNA-binding family protein (TAIR:AT5G23405.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G23420.2

Model type
Protein coding
Short Description
high-mobility group box 6
Curator Summary
Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.
Computational Description
high-mobility group box 6 (HMGB6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages.
Link
InterPro Scan - TAIR