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11-0804-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 225563 [Map]; Strand: c
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-0804-1 - 5-prime edge
    NTCGAANGGN CAAANANGAC NCTGGCGGTN NCNACAATCG NAAGCGCATA 
    TATANAGACT TAAACATCCC NNCGCNTNGA ATGGNNGAGC GGATNATCAA
    ACCNCNTCCN GACGACCACG GATNCNTCAT CAGGTNCTGA TAAATATTTA
    GCNTCGGTTT ATATCTAGAG ATTTAAATAC CCATCTCCTT CGGTTCTGAA
    TATTTCTTTA AAAATGGTTA AGAGGATATA AAGTTTTGGT TTGTATCAAA
    ATTGATGAAA TTTGATGGAA CGTTCCTTAA AACTTAAAAG TGGATATACA
    TGCTAATTTC GGAGATATAT GTAAGATGAC GTGACAATTG CAGGTGGTCA
    TCGAGTTGAT CANACAAAGC TCTGCCCATC TTTTCCACAC ACAAACCGAC
    CACAGCCACA GGTATTTTCT TTGAATTATG TTTACGTGTA ATAGTTATAT
    GTAAAAAGAT ACTCACAAAT CATGCATGCA TAAATAAATA GGTGACCAAA
    ACNATNCNTN NATGTNTNTN TNANNGTAAT AACTAAATNT NTNTGGAAAG
    NNGGGGANAC AANNNNATNN GGNGCNNAAN NNANNNNTNN ANAA

AT2G01500.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.
Computational Description
PRETTY FEW SEEDS 2 (PFS2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: primary endosperm nucleus, nucleus; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 1 (TAIR:AT3G18010.1); Has 564 Blast hits to 564 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR