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11-0808-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15117804 [Map]; Strand: w
      • AT2G36000.1 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G36000.2 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0808-1 - 3-prime edge 
    GCCGCGAGAA TCCTAACTTC TCGAAGTAAT CAATCCGTGG TACGAGTTTA 
    TTGTCAACGC TACAAGAGAG AAGATACGTA TGTTTATGCG GATCTAAGAT 
    TCCGATTCTC TGGAGAAAGT AAAGCGTTGG TCTAAGCTGG TGATCGACGC 
    CTACAAGCGA GAAGACGAGG ACGACGTCGT AAAGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15117920 [Map]; Strand: w
      • AT2G36000.1 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G36000.2 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0808-1 - 5-prime edge 
    CTCGCGGCGG AGCGCCANCG CGATGTTTAA GAGATTCCCG CAGCTGTTTA 
    ATTACAGTAT TGCTGAGAAT TATGAGCCGA AGTTGAAGTA TTTGATGGTG 
    GAGATGGGGA GAGATGTTAG AGAGGTTCTT GANTTTCCTC ACTATTTCTC 
    GTTTAGTTTG GAGAATCGGA TTAAACCGAG ACATGAAGCT

AT2G36000.1

Model type
Protein coding
Short Description
Mitochondrial transcription termination factor family protein
Computational Description
Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G34620.1); Has 810 Blast hits to 602 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 725; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G36000.2

Model type
Protein coding
Short Description
Mitochondrial transcription termination factor family protein
Computational Description
Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G34620.1); Has 802 Blast hits to 604 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 717; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
Link
InterPro Scan - TAIR