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11-0825-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 273982 [Map]; Strand: w
      • AT4G00660.1 - [+] show detail - RNAhelicase-like 8
        Distance: -275; Region: promoter
      • AT4G00660.2 - [+] show detail - RNAhelicase-like 8
        Distance: -275; Region: promoter
    Flanking Genome Sequence: 11-0825-1 - 5-prime edge 
    GATAAACTAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
    CATCCTACGA CCAGGTGGTG TTTGTAACAT CTTGCATAGC GTTAATCTTG 
    AGCTAAAAAC AGCTTTAGAA GCTGAAAGAT AGATTTTTGG GGTCAGACTG 
    AAAACTTTAA TTAAGTTAGG GTAAATATGT AAGGAAAAGG AAGTAATGTG 
    TAATTTTATA AATTTCAGAA AGAAAGAAAT GAAAACTTAA AACTCCGTTT 
    TAATTACCAC AAGGCTCAAG CCCAAGCCCA ATACCGCTAA CGAAATCCGA 
    CGAAATCACA AACATTATAA TATTACATAG AGATAATCAT CTCTCTGTCT 
    CTCTGTCTCT CTGTCTCTCT GTCTCACGCG AGAACTCTGG CTTCGTCTCT 
    ATATTATTGA CCCTTTTGAT CTCTCTCTGT CTCGCTTTCT TCCTCGCGTG 
    GACCTTTTTC GAAAAATATC AATCCCAGAA TTTCGCTTCA TTTTGGATTA 
    TAAACTCCCA GATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 247112 [Map]; Strand: w
      • AT4G00570.1 - [+] show detail - NAD-dependent malic enzyme 2
        Distance: -341; Region: promoter
    Flanking Genome Sequence: 11-0825-1 - 3-prime edge 
    TATTTACCTT TCCTTTTCTC TAATTTCTCT ACTTGGTACT TTTTTTATTT 
    TAGGAAGACG TAATATTTGT TACCAGAGGC ACACGCATGG GTAAAAGCGG 
    AAACACCAGA ACGCGGATAC ACGTGTCATT GATCTAACGG TGAGTTAGCC 
    AATATCCTTT GACCTCTAGT CTCATCACCA ATATGCCTGG AAAATGATTC 
    ACAACCGTCC ACGTGGCGAT CTATATATCC ACATTTACTT TTATACCCTC 
    TTTGCCCGTT TTCCTTCGGG CAACTTCAGT TTTTGTTTCC TTGTATTTAT 
    TGACTTTTGA ATAAAAGAAT TATTTCTTCT TTAGAATTTT AGAAAATTGG 
    AAAGCT

AT4G00570.1

Model type
Protein coding
Short Description
NAD-dependent malic enzyme 2
Curator Summary
Encodes an NAD-dependent malic enzyme (NAD-ME) that does not act on oxaloacetate, indicating that it belongs to EC 1.1.1.39. It is a member of the beta family of NAD-MEs in plants. It appears to function as a homodimer or as a heterodimer with the alpha-type NAD-ME2 (At2g13560). NAD-ME2 transcript and protein levels are higher during the night than during the day.
Computational Description
NAD-dependent malic enzyme 2 (NAD-ME2); FUNCTIONS IN: in 7 functions; INVOLVED IN: malate metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malic enzyme, NAD-binding (InterPro:IPR012302), Malic oxidoreductase (InterPro:IPR001891), Malic enzyme, conserved site (InterPro:IPR015884), Malic enzyme, N-terminal (InterPro:IPR012301), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD-dependent malic enzyme 1 (TAIR:AT2G13560.1); Has 9343 Blast hits to 9326 proteins in 2439 species: Archae - 143; Bacteria - 6323; Metazoa - 607; Fungi - 223; Plants - 463; Viruses - 0; Other Eukaryotes - 1584 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00660.1

Model type
Protein coding
Short Description
RNAhelicase-like 8
Computational Description
RNAhelicase-like 8 (RH8); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: viral reproduction, virus-host interaction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G45810.1); Has 44948 Blast hits to 43709 proteins in 3097 species: Archae - 707; Bacteria - 21922; Metazoa - 6580; Fungi - 4983; Plants - 2686; Viruses - 56; Other Eukaryotes - 8014 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00660.2

Model type
Protein coding
Short Description
RNAhelicase-like 8
Computational Description
RNAhelicase-like 8 (RH8); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: viral reproduction, virus-host interaction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G45810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR