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Mutant Lines
11-0852-1

11-0852-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 2007213 [Map]; Strand: w
- AT1G06550.1 - [+] show detail - ATP-dependent caseinolytic (Clp) protease/crotonase family protein
  Distance: -23; Region: promoter
- AT1G06560.1 - [+] show detail - NOL1/NOP2/sun family protein
  Distance: -402; Region: promoter

ATCACAAGGA GAGGGGGTTT GGTAGGAAAA GACTCTCATC AAACCTTTTA 
GCTTCTTCTA CCTAACCTTT TTTGACCTTT ATATAAAAAA CCTTACATCA 
AAGTAAATAA ACAAGCAGAT GAATATGATG GACTTATTCT TTGCAACCTA 
AGGCCCATCT ACCATTAAAG CTCTGAATGT GATGGGCTTA TTTATTGCAA 
CCCAAGGCCC ATCTGTCATT AAAGCTCTGA ATGATATGGG CTTATTCTTT 
GCAACCCAAG GCCCATCTAC CATTAAAGCT CTGAATGAGA TGGGCTTATT 
CATTGCAACC CAAGGCCCAT CTACTATTAA AGCTCTGAAT GATATGGGCT 
TATTCATTGC AACCCAAGGC CCATACACCA TTAAAGCTCT GAATGATATG 
GGCTTATTCA TTGCAACCCA TGGCCCATCT ACCATTAAAG CTCTAAAAAG 
GTAAAACCCA ACAAGTTTCT TCCCTTGAAG AAGCTCTCTC TATCTCTCCA 
GTCTCCTTCC ACCTTGAATG AGTAAAGCGA GGGTTCTGCT AAAACCCTCT 
TCCCTCACCA CTTGCTTAAC CAGAGCCAAG GCCTTCTTCT CCTCTGTTTC 
TCAGTCACGC TCTATCTCTC ATCANATGGA GATGGGTCCT TCCGATTCGG 
AGCGTTACTG TTNTGATCCG GTNCTGCGAT GGAATCCTGA AGTTGAANAC 
TACTTCACTA AAGCTACCAN CCCGGGCCG

3 prime edge [+] show sequence

Chromosome: 1; Position: 2007097 [Map]; Strand: w
- AT1G06550.1 - [+] show detail - ATP-dependent caseinolytic (Clp) protease/crotonase family protein
  Distance: 0; Region: exon1 (5UTR)
- AT1G06560.1 - [+] show detail - NOL1/NOP2/sun family protein
  Distance: -518; Region: promoter

CTTGTGATGA TGATTAGCTT CACCTGCCAT TTTCTCAATG ACTGTACCCA 
CAGGTTATAT AAATGGCTTC TCACATTTCG AGCTCCATTC CTCACCAGAC 
CCCTTTTGCA AGGTTATCCC TTTTTCTCTC TCTCTTTCAT TTGATTTCAC 
TATTAGCNTT CTTCATTTTT GTGAGAGGCT CTTGGATTTT TTTTATTTTT 
GCAACTTGTA ATGGAGTCTG TTCCCATTAA AGTTTCTTCA TTTCTGAGTC 
TTTAGCCATC TATTCGTTGG TTGGAACTTG GAAGAGTAGG ATTTTAGTTT 
GAAATGCTCA TTCTCCGATC ATAAAGTTTA TATATTTTGA ATAGAATTTG 
TGTTCTTGTT CTTGTGGATG AAGTAGAGAA TAATCTAGGG AGGTTGAAAT 
TAGATTGTTG CAAGTTCGTG AATATTAGGA TTTGTCTCAT TGGGTCTGAA 
GTTTTGTGGA ATTTCTTGAC AGTGTAGTTT GGCAGTTTGA GAGTGTTTTT 
CATATCCGAC TCTTTCAAAC TGATGGTTGT GACATTTTTG TTGACCAGAT 
TAGTAAGTTA TTGTTGACGT TTTGAGAAAG CTGGATATGG CTCAAGAAGG 
TCAAAACATC GATGAGCCGG TAATCTCTGC CTTTTTCAGT CTTTTGTAGN 
GTTTCTCCTC TTCATGATTC ANNCGTAAAC CATCATCAAA ACTTTNGGAA 
TCTGGCATTC TTACAGGTTG TTATGGANAG GAAANGGGTC TGAANAT

AT1G06550.1

Model type: Protein coding
Short Description: ATP-dependent caseinolytic (Clp) protease/crotonase family protein
Computational Description: ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: 3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity; INVOLVED IN: response to karrikin, fatty acid beta-oxidation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: beta-hydroxyisobutyryl-CoA hydrolase 1 (TAIR:AT5G65940.1); Has 26566 Blast hits to 26556 proteins in 2155 species: Archae - 406; Bacteria - 18031; Metazoa - 1157; Fungi - 686; Plants - 463; Viruses - 0; Other Eukaryotes - 5823 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G06560.1

Model type: Protein coding
Short Description: NOL1/NOP2/sun family protein
Computational Description: NOL1/NOP2/sun family protein; FUNCTIONS IN: methyltransferase activity, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26600.1); Has 13569 Blast hits to 8411 proteins in 2331 species: Archae - 604; Bacteria - 9970; Metazoa - 826; Fungi - 418; Plants - 360; Viruses - 0; Other Eukaryotes - 1391 (source: NCBI BLink).
Link: InterPro Scan - TAIR