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11-0855-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3110884 [Map]; Strand: c
      • AT3G10090.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
        Distance: -858; Region: promoter
      • AT3G10100.1 - [+] show detail - transposable element gene
        Distance: -894; Region: promoter
    Flanking Genome Sequence: 11-0855-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCTTATTAC CTCAAGGGTT TTGAGCTTCT TTCCGTGCAC CTCAACCATT 
    ATTTCATACA AAAAAAGAAC CACAAATTCC TGCACCAACA CACATATTTG 
    AAGACCTTTA ATTTTGAGTG GAAAAAGATA GTCCAATAGT TTGGCTACAC 
    CTATCTTGGA CTATATATAT TAAACACATT TCGCAATCAT CCAAAGACTC 
    CATCTCATAC AACTAGACAC TACATAAAAA CGGGTATTCT AGCACTCGGA 
    AAATGCTATC TAATAATAAA GTAATGTTGC AAATCTATAA AGTTGAGCAA 
    GTAGATATCA CATGATCAGT CTAATTTCCA TCTCCCATAA TTTCCTTCAT 
    TTGTTGAATT ATTTCTCTAT CAGTGTTTGA TCAGGTTAGA ACATGTGGCG 
    AGCTCATGAC TCAGGCCCAT TAACAGGCCA GCCGGGATTT CCCGGTTCAA 
    TCGAATT

AT3G10090.1

Model type
Protein coding
Short Description
Nucleic acid-binding, OB-fold-like protein
Computational Description
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G03850.1); Has 1066 Blast hits to 1066 proteins in 391 species: Archae - 235; Bacteria - 0; Metazoa - 333; Fungi - 148; Plants - 161; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10100.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09910.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)
Link
InterPro Scan - TAIR