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11-0882-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 33757 [Map]; Strand: w
      • AT4G00085.1 - [+] show detail - pre-tRNA
        Distance: -43; Region: promoter
      • AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -334; Region: promoter
    Flanking Genome Sequence: 11-0882-1 - 5-prime edge 
    ACCGTAAATT GATATAATTC AATAACAAGG AAAGTTCTAA GCCTAAAACA 
    AGCAAGAAAA TACCTTTGCC GTATACAAAG ATTATTAGCA TTATTATCGA 
    CATCACAGAA TGTAGCCCGT CTAGCTCAGT TGGTAGAGCG CAAGGCTCTT 
    AACCTTGTGG TCGTGGGTTC GAGCCCCACG GTGGGCGATA GTGTTTTTTC 
    TGTTGTTTTT GTAAAGAGCT GAAGTTATAA ATGGGCTTTG AAATTAATGG 
    GTTCGAACAC CAACGGTGGG CCTTTTTTTC TTTCTATTTT TGTAAAGAGC 
    TGAATTTTAA AATGGGCTTT GAAATTAATG GATCAGTGAG GTTAAGGCCC 
    ATATTTCTAA TAAAATTAGA AGTAGTTACA AACCCGACCC GACCCGGTTA 
    CGTGTATGCG GAGATCACTC TCCTCTCCAT AAGCTAAGCT CTAGAAACAC 
    CGCCTTTAAC GTCTCGCTGC ACCATTTTTC ATCGTTGATC AGTCGTCGAT 
    CCTCTTGAGT GATTTGATTT TAGACTTTCT AGTTATCAAA CTCGAAAGAT 
    GGATTCTGTC CTTGTANTGG GCATTGCATC GGTTATTCTC GGTGCGTTGA 
    TCGCTGTACT CTTNTTCGGN AGCTACTTNC GGAAGCGGNC ATNNGAGGTG 
    CAATCCNTGG NCAAAGCGGA NCCTANGATA CCANNCCGGG CCGNNNACCA 
    CCCTNNCCTN NA

AT4G00085.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Lys (anticodon: CTT)
Link
InterPro Scan - TAIR

AT4G00090.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Link
InterPro Scan - TAIR