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11-0898-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26564103 [Map]; Strand: c
      • AT1G70490.1 - [+] show detail - Ras-related small GTP-binding family protein
        Distance: 0; Region: exon7 (3UTR)
      • AT1G70490.2 - [+] show detail - Ras-related small GTP-binding family protein
        Distance: 0; Region: exon7 (3UTR)
      • AT1G70490.3 - [+] show detail - Ras-related small GTP-binding family protein
        Distance: 0; Region: exon8 (3UTR)
    Flanking Genome Sequence: 11-0898-1 - 5-prime edge 
    TGCACAGGCA TGATGAGGGA GAAATTGCGT TGCATCGAGA TGATTCTGTC 
    TGCTGTGTTG GGATCTCTCT CTGTCTTGAT GCAAGAGAGA TTATAAATAT 
    TATCTGAACC TTTTTGCTTT TTTGGGTATG TGAATGTTTC TTATTGTGCA 
    AGTAGATGGT CTTGTACCTA AAAATTTACT AGAAGAACCC TTTTAAATAG 
    CTTTCGTGTA TTGTGCCTGG ATTAATATGA TTGATTGTTT TGCTTTCTTG 
    TTTTTGCGTA TCCTATTTTC ACGTCTGCAT CGTTTTCATC ACAGAAATAT 
    CTTTCTTTCT TTACCAAAAT AAATGAATTA GAAATTTTGT ATATTTGAAA 
    ATTCATATCA CTATTGGTCA TTGAGTCATG GTTGTAATGG TCATGAGTCA 
    TTGAGTCATG GTTGTAAACT TCTTCAACAA GGAATAGATT CCCACATTTA 
    TATGCCAGTG TATCTTATGA AAACAAATAT TATATTATGT TCACATATTG 
    CTGGGTGATC CAAAAATCCT CAAGATATCT ATTATCCCAG AATCATGGAC 
    TGTGTGAGTC TGTGACTTAA CACAAATCAT TGCGTCGTCT CCTTGATGTT 
    CTTCTATGTG CAGACCATCT TTCTTTTATA TCTCCAGGTG TGCCAATCCG 
    TTGCTCATCG GGCGAGTGAC CATCCTCCAT TACTCCANCT GCACGGATCA 
    CCANCCCGGG CCGNNNACCN CCCGTGCCCC TA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26564219 [Map]; Strand: c
      • AT1G70490.1 - [+] show detail - Ras-related small GTP-binding family protein
        Distance: 0; Region: intron6 (CDS)
      • AT1G70490.2 - [+] show detail - Ras-related small GTP-binding family protein
        Distance: 0; Region: intron6 (CDS)
      • AT1G70490.3 - [+] show detail - Ras-related small GTP-binding family protein
        Distance: 0; Region: intron7 (CDS)
    Flanking Genome Sequence: 11-0898-1 - 3-prime edge 
    CCTGTGCAAG AAGAGCAACA CGAGGTAAAG ATATAAGCAT CGCAGAATAA 
    AAAGAAACCA GCTCGTTAGA TTTGTGTGTT TTTGAAGAAA CTTATGTAGT 
    TATGTTACCT TGCCAGCGAT GTTGTTGGAG AGCCAGTCCA GACCTTCATA 
    AAGCCCTTCA CCTGAAGTGG CACATGTGCT CTGGATATAC CTTTAGCGAG 
    CAAAAACACA CATCAGTATC GAACAGAAAT TGTTTGACTT TTGAAACTTA 
    TAAGGATGTT TATTTACCAA TGACGCTGAC GGAGGGAGTG AAGGCCAAGC 
    T

AT1G70490.1

Model type
Protein coding
Short Description
Ras-related small GTP-binding family protein
Curator Summary
A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.
Computational Description
ARFA1D; FUNCTIONS IN: phospholipase activator activity, GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor 1 (TAIR:AT1G23490.1); Has 15036 Blast hits to 15017 proteins in 510 species: Archae - 14; Bacteria - 52; Metazoa - 7716; Fungi - 1944; Plants - 2035; Viruses - 3; Other Eukaryotes - 3272 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G70490.2

Model type
Protein coding
Short Description
Ras-related small GTP-binding family protein
Curator Summary
A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.
Computational Description
ARFA1D; FUNCTIONS IN: phospholipase activator activity, GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor 1 (TAIR:AT1G23490.1); Has 15036 Blast hits to 15017 proteins in 510 species: Archae - 14; Bacteria - 52; Metazoa - 7716; Fungi - 1944; Plants - 2035; Viruses - 3; Other Eukaryotes - 3272 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G70490.3

Model type
Protein coding
Short Description
Ras-related small GTP-binding family protein
Curator Summary
A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.
Computational Description
ARFA1D; FUNCTIONS IN: phospholipase activator activity, GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor 1 (TAIR:AT1G23490.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR