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11-0900-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14897405 [Map]; Strand: w
      • AT2G35390.1 - [+] show detail - Phosphoribosyltransferase family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G35390.2 - [+] show detail - Phosphoribosyltransferase family protein
        Distance: 0; Region: intron1 (CDS)
      • AT2G35390.3 - [+] show detail - Phosphoribosyltransferase family protein
        Distance: 0; Region: intron1 (CDS)
      • AT2G35410.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -919; Region: promoter
    Flanking Genome Sequence: 11-0900-1 - 5-prime edge 
    CACTCAATCT AGGAACCTCA AATCCGGAAA CGTAATAAGA AAGGAAGGAT 
    CAACATTCAA AAATGCAGAA TAAGCAATTC TATAGATTCA TGAACACCGC 
    TTACAACACA AGCGAAGACA GAGTTTCGGG AGCGAAACTG AGAGGTTCTG 
    ACGGATAGAG AAGAGTTAGA GAAGAAAGTT GAAGACGAAG AGGCTAGATA 
    CNGTCGGCGT TTTTGCGGCG GGAGGAAAGG ATAGACCCAG AGACGCCATT 
    GTCCGCAATA CCTCACGTAA ACCCACCTCT GACTCACTCA AGCAGTCTCT 
    TCCACAACGA ATT

AT2G35390.1

Model type
Protein coding
Short Description
Phosphoribosyltransferase family protein
Computational Description
Phosphoribosyltransferase family protein; FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.10 ten leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: phosphoribosyl pyrophosphate (PRPP) synthase 2 (TAIR:AT1G32380.1); Has 11485 Blast hits to 11226 proteins in 2803 species: Archae - 263; Bacteria - 6160; Metazoa - 635; Fungi - 723; Plants - 204; Viruses - 13; Other Eukaryotes - 3487 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G35390.2

Model type
Protein coding
Short Description
Phosphoribosyltransferase family protein
Computational Description
Phosphoribosyltransferase family protein; FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.10 ten leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: phosphoribosyl pyrophosphate (PRPP) synthase 2 (TAIR:AT1G32380.1); Has 11486 Blast hits to 11227 proteins in 2803 species: Archae - 263; Bacteria - 6160; Metazoa - 635; Fungi - 723; Plants - 205; Viruses - 13; Other Eukaryotes - 3487 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G35390.3

Model type
Protein coding
Short Description
Phosphoribosyltransferase family protein
Computational Description
Phosphoribosyltransferase family protein; FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.10 ten leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: phosphoribosyl pyrophosphate (PRPP) synthase 2 (TAIR:AT1G32380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G35410.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G09040.1); Has 25515 Blast hits to 17648 proteins in 833 species: Archae - 12; Bacteria - 2210; Metazoa - 12015; Fungi - 3602; Plants - 4930; Viruses - 0; Other Eukaryotes - 2746 (source: NCBI BLink).
Link
InterPro Scan - TAIR