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11-0904-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16502223 [Map]; Strand: c
      • AT3G45095.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-0904-1 - 5-prime edge
    CTCAAAACCA ACACCTACTA GTGTTCCTGC TCAAAGAACC CAGCCACAAA 
    CACAATTTAT TTCCATTCAG CCCTGTCACT CAATGATGAC ACGTGCAATA
    GCTGGGATTC GAAAACCAAA ACAGGTCATC TCACTTCTCA CCACCACAAA
    ATCGCCTCTC CCAAAAAGTC ACATTCATGC TTTTTCTGAT CCAAATTGGA
    CACCAGCGAT GACTGATGAG ATAGATGCTA TGCTTAAGAC TAAGACTTGG
    AGTTTAGTGC TTAGACCTCC TAAGGTCAAT ATTGTAAGAT CTATGTGGCT
    GTTTAAACAT AAATATGATG CAGATGGCAG CATAACTCGT CACAAAGCAA
    GATTAGTTGC TAATGGAAAA TCACAGGAAG CCGGTGTTGA TTTCACAGAG
    ACGTTCAGTC CGATGGTCAA GCCGGCGACA ATACGAACTG TTCTCAATGT
    TCGTGTTGGT CTCGATTGGC CAATACGTCA ATTAGATGTC AAGAACGTCT
    TTCTTCAAGG AGACCTCGAA GAAACGGTGT ATATGCATCA GCCTCCGGGA
    TTTATTGATA AGAACTCTCC CAATCATGTG TGTCGATTAC ACAAAGCGAT
    CTATGGTCTC AAGAAAGCAC CACGAGCTTG GAACTCCAGG TTTGCAAAAT
    TCATCACCCA CCTTGGCTTT GTTACAAGCA GGGCAGATGC ATCGCTGTTT
    GTTTACAGAA AAGGAGTTGA CCTTGCATAC ATTCTCCTAT ATGTGGACGA
    T
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16502339 [Map]; Strand: c
      • AT3G45095.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-0904-1 - 3-prime edge
    GTTTTGAGTA GGAAATGGAG TTTGAAGAAT AGGTTGCAAT TGAGAAGAAG 
    GAACATCATC ATCGAGAAAT TGATACTTTG TGTCTTTTTG ATGTGTTTCG
    GCTGCCGGAA AAATATCCTC ATCAAAGTAT ACATGACGAG ATATAATGAT
    CTTATTAGTT TTTAGATCAA GACATATGTA GCCACGATGT TGTGATGGAT
    ATCCAAGAAA CAAGCATGGA CTTGATCTTG GAGAAAGTTT ATGAAGATTG
    GAATGATTTA AGTTTGGAAA ACAAAGGCAG TCGAATACTC TCAAGTGATC
    ATAGCNTTGG TTTCTTATTA AAAAGACGAG TGTAGGGGAT TTGGTTTTGG
    ATGGCGGAAG AGGGAAGAAT GTTTAATAGG TGGACATCGA CATGGAGAGC
    TTCTACCCAG TAACTTGGCG AGAGTTGAGC TTGAAAGAGA AGAGCTCTAA
    TCGCATTGTT AATGGTGCGT ATCATTCGCT CAGACTTTCC ATTTTGTTGA
    GATGTGTGAG GACAAGAAAA ACGAACTGTA ATTTCATTTG AATCCAAATA
    ATTCTTGAAC TCATGGTTAT TATATTTTCC TCCATTCTCG CATTGACAGG
    ATTTTATTTG GGTATTGAAT TGATTTTTGA CATAAGCCGT AAATTGAAGG
    AATTTTTGAA CCATTACCAC CGATGACCGA NTGAGTGATG TTNTGATTAA
    NATTANAGTG AANATTACCT GTTGTGCCCN ANAGANGTGC NNNGGCNNCC
    NAATCCNTNA CCCTGGG

AT3G45095.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 2.4e-140 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR