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11-0906-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20078331 [Map]; Strand: w
      • AT1G53780.1 - [+] show detail - peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;AT...
        Distance: -618; Region: promoter
      • AT1G53780.2 - [+] show detail - peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;AT...
        Distance: -583; Region: promoter
      • AT1G53780.3 - [+] show detail - peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;AT...
        Distance: -103; Region: promoter
      • AT1G53785.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 11-0906-1 - 5-prime edge 
    GGGATAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC TTTTAGCTCT TCTTTACGCG CCTTAGGCCT 
    CTAAATAATC CCTTATAAAA AATCATTCAA AATGCTATAA CATGCGTGCT 
    GTTTTCAGAT AGAAGAGATA ATAAAACTAC NGTGATGTTT TCAATTCATA 
    AGTACAACCC GGTTTAGAGA TGGTTTGTTG ATGAGATTTA AACCGGAAAT 
    AAAACCGATA TTCTCTCAAC GAGGCTATCC CTTATTCGAC GGTTGCGAGC 
    ACAGCCACCG CCAACAACCC GAGACCGGAG CCACCAATCC CGCAAGCCGG 
    AGGAACCGTA TCTTACCGCA GGACCTAACC CCATCACATG AACCGCCGTC 
    GCTGAAACTC CCGAAAAGAG AAAGCGAGCA CGAAATACCT CCGACGATAG 
    CCGTCATCAC CCCTCAGCTG CGGGATC

AT1G53780.1

Model type
Protein coding
Short Description
peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases
Computational Description
peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein folding, protein catabolic process; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Cyclophilin-like (InterPro:IPR015891), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A 1A (TAIR:AT1G53750.1); Has 32848 Blast hits to 30585 proteins in 3159 species: Archae - 1478; Bacteria - 10290; Metazoa - 6090; Fungi - 3965; Plants - 3383; Viruses - 25; Other Eukaryotes - 7617 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G53780.2

Model type
Protein coding
Short Description
peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases
Computational Description
peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein folding, protein catabolic process; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), ATPase, AAA+ type, core (InterPro:IPR003593), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A 1A (TAIR:AT1G53750.1).
Link
InterPro Scan - TAIR

AT1G53780.3

Model type
Protein coding
Short Description
peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases
Computational Description
peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein folding, protein catabolic process; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A 1A (TAIR:AT1G53750.1).
Link
InterPro Scan - TAIR

AT1G53785.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR