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Mutant Lines
11-0917-1

11-0917-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 3; Position: 20737926 [Map]; Strand: w
- AT3G55880.2 - [+] show detail - Alpha/beta hydrolase related protein
  Distance: 0; Region: intron2 (CDS)
- AT3G55880.1 - [+] show detail - Alpha/beta hydrolase related protein
  Distance: 0; Region: exon2 (3UTR)

TTTGAAAATG ACTAGTCAAT TGAGAAGGTT TGATTTTTCA CTCCCAACAA 
AAACTAGAGG AAATTGTATT TTGATTAGCA CTTTCTTATG TATAAAATCA 
CTTTGATTCA AACCTAATTA GATAGTGACG AATAAATAGT ATTAATTACT 
TATATATAAT AAGAATAAGA ATAAATCGAC ATTTTCCCTC GAATAAAAGA 
AAGAGTGAAA CGGATGTTTC CGAGTGGGAA CCGTGTGGGA TGAATAATGA 
TGGACGACTG CTTTATATAA TCTTCGTATT TAATGTTACT TTCAATTAAA 
TTTTTATAAG ATATTAATAG ACATGACAAC GTCACTAACA CCTAAAACAT 
GGCTCATGAT TTTAGTTGAA GTGTGACTAA TAAATATATA TATTCCAATT 
TGCAGGTTTC AGCTTGTAAA AATGTGTTTC CCAGATATCA AAAAATCCTC 
CAACAAGAGA GACTCAAATA GCTAGCTATA TTCGAAGTCA ATCGTCACAT 
GTACATATAT ACTTACAGTA CAAGCTACAT GTATATAAAT ATACGTATCT 
ATGCAACATC TACTGGGTTT TGGTCTCCTT TCATGTTCGA GGTAAAAAAT 
CCACCTCATC ATTTTTTTTA ACCAACTTGC ATATTTTAAT AACTTGATTA 
TTAAATACTA AAGTTGCTTT AATTACTATC ATTTTCGAAG AGTGTGAGTC 
ATATATAGGG GAGGTAACCA ACTTG

3 prime edge [+] show sequence

Chromosome: 1; Position: 20706936 [Map]; Strand: c
- AT1G55450.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
  Distance: -46; Region: promoter
- AT1G55450.2 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
  Distance: -43; Region: promoter
- AT1G55460.1 - [+] show detail - DNA/RNA-binding protein Kin17, conserved region
  Distance: -542; Region: promoter

GCGTGCNCAG GACTATNCTN ANANGTAAGG CNCGGCNACC GAANATANNA 
NTGCNACNAN TGCNNNTCNT CNAAGACNAC TTATCGCNNA CCGGGTCCGC 
CTTCACNACC CCCNCCANTT NNTCCCCTGT GCAGATNNTC CAAAGGCATT 
ACGAACNNTA TNANNTTTTN TGCTACTTCG NNTNAGTATC CTANGNCNAC 
GNTTTCTTGA NTCTGCCNTT GTAGACNNGA CNTNCNTGGA TGGTTTTACG 
ATTCTCAATC AATGTATNTC TTAATAATAG NATTCNNNTN CAACTAGGAA 
ATTNATTCAN TAAAAANGCN NGATTCCATA ATNTCCATTG TNGAAAGACT 
GAAAGCTCNA GAGATCACAA GATATAAGAC CAANCANGCT GNGTAANACT 
TATTTNANGC ACATATTATA AANTTNTAAA TTCACATTTT CTTTACTTNN 
NCNNATNTAC ATNTCTNTTA NCTATANGCC CANTATNNAA TGGNCTTTAA 
TNGATGGGNC NTNTANANNA TNATATNNGT GCATGAGTNT TCGGTTCNTT 
TCGNTTCNNT NCNTNCNNTA ATNNTTNGTC GANNGANTCN NGNTNANCCC 
NCGGNNNAAN TGGNNGNGNC NCTGAACANA CNCNTANANC NNNANNTNAA 
NNTNCNCCCT TNCCTNTNNT NNNTNNAAAC CCNNANNAAT ATNNNGCNNN 
GGNTNTCAAC AANCNACNTA AACNAATAAA AGNATANTNN NNATNTAANN 
CAAANCCAAC ANNNTTNTCN CNATTTCACA NCTGTNNCNG TTNNNCCC

AT1G55450.1

Model type: Protein coding
Short Description: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: response to salt stress; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G54150.1); Has 1000 Blast hits to 995 proteins in 384 species: Archae - 6; Bacteria - 568; Metazoa - 69; Fungi - 129; Plants - 164; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55450.2

Model type: Protein coding
Short Description: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G54150.1).
Link: InterPro Scan - TAIR

AT1G55460.1

Model type: Protein coding
Short Description: DNA/RNA-binding protein Kin17, conserved region
Computational Description: DNA/RNA-binding protein Kin17, conserved region; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), DNA/RNA-binding protein Kin17, conserved region (InterPro:IPR019447), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: DNA/RNA-binding protein Kin17, conserved region (TAIR:AT5G51795.1); Has 1885 Blast hits to 1561 proteins in 251 species: Archae - 4; Bacteria - 25; Metazoa - 715; Fungi - 242; Plants - 160; Viruses - 13; Other Eukaryotes - 726 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G55880.1

Model type: Protein coding
Short Description: Alpha/beta hydrolase related protein
Curator Summary: A gain-of-function mutant of SUE4 exhibited improved low sulphur tolerance.
Computational Description: sulphate utilization efficiency 4 (SUE4); BEST Arabidopsis thaliana protein match is: Alpha/beta hydrolase related protein (TAIR:AT2G40095.1); Has 87 Blast hits to 87 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G55880.2

Model type: Protein coding
Short Description: Alpha/beta hydrolase related protein
Curator Summary: A gain-of-function mutant of SUE4 exhibited improved low sulphur tolerance.
Computational Description: Alpha/beta hydrolase related protein; BEST Arabidopsis thaliana protein match is: Alpha/beta hydrolase related protein (TAIR:AT2G40095.1); Has 87 Blast hits to 87 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR