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11-0924-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 81259 [Map]; Strand: w
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-0924-1 - 3-prime edge 
    GTACTCAATG TAGGAATCAA GTCTAATAAC ATCATGATCA CTGGCGATGG 
    TATCGGCAAA ACCATAATCA CCGGTGACAA AAGCAAGGGC CGAGGATTTT 
    CCACTTACAA ATCTGCCACT TTTGGTTAGA CATTTCTCCT TAAACAACTT 
    ACACTATATA TATTCGTTTT ATTGCCACGT AACATATTGC ATGACAGTGG 
    CTGAGGGGGA CGGTTTCGTG GGACGAGACA TAACAATCAG GAACACGGCA 
    GGACCGGAAA ACCATCAGGC GGTGGCTCTC AGATCGAATT

AT4G00190.1

Model type
Protein coding
Short Description
pectin methylesterase 38
Computational Description
pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR