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11-0928-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17763634 [Map]; Strand: w
      • AT3G48110.1 - [+] show detail - glycine-tRNA ligases
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-0928-1 - 3-prime edge 
    AAGAGCTGTT GAGAGTTTCC AGGGTCAGGT TTCAATATGA CTTGAAATTG 
    AGTGTGTCTT TGAAGCCTAT TGGGATTCTC TCCATAGCGA GAGTCGTCAG 
    GACGTATGCT TGGCTCAACA TAAGCAACAT TCCATGGTTC AGGACCAAGA 
    ACCCTCAAAA AGGTACAAGG ATTCATGGTG CCAGCTCCGA CCTCAGTGTT 
    ACTTGGTTGC ATAACGGCAC ATCCAACGGA AGCCCAATAT TCCTTCAATT 
    TCAAAACAAA AGAGAGTAAT TCAATTTGAA TT

AT3G48110.1

Model type
Protein coding
Short Description
glycine-tRNA ligases
Curator Summary
glycine-tRNA ligase
Computational Description
EMBRYO-DEFECTIVE-DEVELOPMENT 1 (EDD1); FUNCTIONS IN: glycine-tRNA ligase activity; INVOLVED IN: regulation of embryonic development, glycyl-tRNA aminoacylation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal (InterPro:IPR002311), Glycyl-tRNA synthetase, class II, heterodimeric (InterPro:IPR006194), Glycyl-tRNA synthetase, class IIc, beta subunit (InterPro:IPR015944), Glycyl-tRNA synthetase, class IIc, alpha subunit (InterPro:IPR002310); Has 11308 Blast hits to 11293 proteins in 1754 species: Archae - 4; Bacteria - 6864; Metazoa - 4; Fungi - 1; Plants - 40; Viruses - 0; Other Eukaryotes - 4395 (source: NCBI BLink).
Link
InterPro Scan - TAIR