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11-0937-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6353601 [Map]; Strand: c
      • AT3G18500.3 - [+] show detail - DNAse I-like superfamily protein
        Distance: 0; Region: intron4 (CDS)
      • AT3G18500.2 - [+] show detail - DNAse I-like superfamily protein
        Distance: 0; Region: intron4 (CDS)
      • AT3G18500.1 - [+] show detail - DNAse I-like superfamily protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 11-0937-1 - 5-prime edge 
    GTTTTCCCTC TCCAAAACTC CAAACCTTTT CAAAACAAGA TAAATCTTAA 
    ACAATGCTGA GTTGTAGTAG TCGTTTTTCT TCACACTAAT ACAGATTGAG 
    TCAAACAATA TGTGCTACCT GTCAGCCTTC CAAAACATTG CGCAACCATC 
    GACGTTATCT CCAGTTCGCC GCTGCCATTG CAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6353717 [Map]; Strand: c
      • AT3G18500.3 - [+] show detail - DNAse I-like superfamily protein
        Distance: 0; Region: exon5 (CDS)
      • AT3G18500.2 - [+] show detail - DNAse I-like superfamily protein
        Distance: 0; Region: exon5 (CDS)
      • AT3G18500.1 - [+] show detail - DNAse I-like superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 11-0937-1 - 3-prime edge 
    GGGAAAACAT TGAGTTTAGC CAGTTTGGTA TGCGGGATAA TGTTGCACAG 
    CTTGCTGTTC TTGAGGTAGA AATTTTTTTT GAATGTTTTA CGAACTTCTT 
    TTTTCATGTA TATGCTTTGA CTGATCCAGT TTTTTTTTGG GTTTCCCGTC 
    AGCTCCGGAA GTCTAATAAG TCAANAAANA TACCTGCTGG GTAACATTCA 
    CGTGCTTTAT AATCCAAATC AAGGANATGT GAAGCTGGGT CAGGTAAGCC 
    TCGACATTTC AATTTGTATA TCCGCTACAC NANCAATTGA CTGTCATGAA 
    AGTTTACAAA ATGTTGATCT GGCCCTTTCA CCTTTGGCTT TAANACTTCA 
    GGAAATTGTA CTGAATCTCA GTCAANANAT GTTTACTANC ATTAGTTTAA 
    ATATCTAANA CAAGTCTAAG TTACTAGTAT ATGTCATGAC ATGTTCATTA 
    GTATATGTCC TAATGCTCAT GAAAACGTAT TGAATT

AT3G18500.1

Model type
Protein coding
Short Description
DNAse I-like superfamily protein
Computational Description
DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G73875.1); Has 1180 Blast hits to 1142 proteins in 213 species: Archae - 0; Bacteria - 8; Metazoa - 512; Fungi - 213; Plants - 283; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G18500.2

Model type
Protein coding
Short Description
DNAse I-like superfamily protein
Computational Description
DNAse I-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G73875.1); Has 1375 Blast hits to 1335 proteins in 238 species: Archae - 0; Bacteria - 71; Metazoa - 526; Fungi - 233; Plants - 309; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G18500.3

Model type
Protein coding
Short Description
DNAse I-like superfamily protein
Computational Description
DNAse I-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G73875.1).
Link
InterPro Scan - TAIR