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11-0946-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25527734 [Map]; Strand: c
      • AT5G63790.1 - [+] show detail - NAC domain containing protein 102
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0946-1 - 3-prime edge 
    NNGNNACCAN GNNTCANTNN TTGTCCACGG ACTGAAGNTT NACCTGNNNN 
    CTCCNATGGN TGNAATTNNN ACAAGCCATT CTCTGCGATA ACNGGNNCGG 
    TNANTCGGNT CTGANNCACA TNTNCNGCTA AGATAGANCN NNGACAAGCT 
    NTTCAGTCCG TNGGATGAAA TCGGAATCCC GCCGGNANNT TCAACTCCNC 
    CTTCATTTTT GGAAAAGTNC CTNGNACGTT TNCTTGTGGA TANGATTGGA 
    TTTNGAGNTT ACAATAAACC TTCGAATCCG GAGGATCTTT GNGGTTTATC 
    TCAGNGATNG ANATCGAGGA GAAGAGAGCA NTGTCCATGG AGCTTTTATA 
    AACGAAGGGG AGGTNCATGA ACCACACGTG TGTAGTTTTC TTTCGGACAC 
    GTGTGATAAA AACCAACCTT TTTCTTTTTC AACGTTGACC GNGCAGNCAG 
    CNGAGGTTAC ACGTGGCTTG GACTAATTGG ATGATCNACA TACNNTAGNA 
    TGTNATGATG TCATTGCTTC CCTCAACCGC ANGANCCTTT NCGTNGTTGT 
    ANNTCTGGTA CNTTANNGNG NGNCAGNTTG NNNCGATGNT CTCTGGCTGA 
    CATTCTATTG CTACTTNTAA GNGGACTGAG CANAANATAN CTGNGGAGCT 
    TNTNCANGNN NATTNCNNTN ANNNACNNGN AANNNGCANA CANAAGTTGA 
    GAAAAGATTA TTTANTTTTA NNCNTNNCCG GCTTTTNTNA CTCTTNTANN 
    TTTNANGATN NNAAATN

AT5G63790.1

Model type
Protein coding
Short Description
NAC domain containing protein 102
Curator Summary
Encodes a member of the NAC family of transcription factors. ANAC102 appears to have a role in mediating response to low oxygen stress (hypoxia) in germinating seedlings.
Computational Description
NAC domain containing protein 102 (NAC102); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT5G08790.1); Has 3012 Blast hits to 3006 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3012; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR