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11-0958-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17691309 [Map]; Strand: c
      • AT2G42485.1 - [+] show detail - other RNA
        Distance: 291; Region: intergenic
      • AT2G42490.1 - [+] show detail - Copper amine oxidase family protein
        Distance: 98; Region: intergenic
    Flanking Genome Sequence: 11-0958-1 - 5-prime edge 
    ATTAGTTTCA TACTTTGGAA AAGAGAAGCA AATAAATATA AACATTGGAA 
    GAGAGGAGCA ACATCTCTAC TATTTTCATT TTATAAGCCA ATCAGAGCGC 
    CCCATGTCAT ACCCCATTCT CACCTTTTAC GTGATTTCAC ACCCACTCTC 
    ACTAATCGCG TGTTGAGGGC GTGTCTACGT TTTCTGTGGG TTCTAACCCA 
    CCAAATGGCT TGTTTTGAAA CACACTCGCT CTTTTTTAAA AAAGCCTCGA 
    GTGCGTGATT TCAGTGTTTT TCTCCTTTAA TTCCAATTCA AACCCAACCG 
    AAATCAATTG AATTTTTCAA AACCATGTAA ATCGAACCGA AATTAAAAAC 
    ACAAACGACA AACTAGCAAT TGTCACTTCC ACAATTGATC CAACTCCGAC 
    GAACCAGATT GATAATTTTG ATTCGATTCC ACACAGATAA CATATAGTCC 
    AAACCAAATG CAATTCATAT AGCCTAAAAA TCTTAGCTAA AACCCAAAGA 
    AAAACACTGG AGTTACCTGT TGCATAAGTA GCACTGCTCT TGCCCACATA 
    TATGTAGCAG AGACGAGATG GCTCCAAGTC CCATGGAGTC GCTCTTGCCA 
    CAAATCAATT CACAAATTAA GAAATTGAGC TCAGAAAATT TCAGAAGAAT 
    T

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17691425 [Map]; Strand: c
      • AT2G42490.1 - [+] show detail - Copper amine oxidase family protein
        Distance: 0; Region: exon12 (3UTR)
    Flanking Genome Sequence: 11-0958-1 - 3-prime edge 
    AAACTAATGC AATTCATAGA AAAACACACA CACCAAACAC GAAAATAAAA 
    GATTCAAATA TGAAATTTTA ATAGAAATAT TCCAATGACA AAGGTCTTTT 
    TAGTCTTGCA AACACACACA CCAAACACGA AAATAAAAGA TTCAAATATG 
    AAATTGTTCT TAACCAACAG CAACGCCTCC AATTTTTTAA GAGATCAAAG 
    AAAGAAAACA AATGATATTC ATATTCTTCA AAGCT

AT2G42485.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR

AT2G42490.1

Model type
Protein coding
Short Description
Copper amine oxidase family protein
Computational Description
Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT3G43670.1); Has 1554 Blast hits to 1550 proteins in 277 species: Archae - 14; Bacteria - 379; Metazoa - 243; Fungi - 461; Plants - 232; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).
Link
InterPro Scan - TAIR