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11-0966-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2353861 [Map]; Strand: c
      • AT3G07360.2 - [+] show detail - plant U-box 9
        Distance: -858; Region: promoter
      • AT3G07360.3 - [+] show detail - plant U-box 9
        Distance: -858; Region: promoter
      • AT3G07360.1 - [+] show detail - plant U-box 9
        Distance: -860; Region: promoter
    Flanking Genome Sequence: 11-0966-1 - 5-prime edge 
    GATAAACTAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
    CATCCTACTT TCATGACGCG AGAGGAGTGA GTGTAATGAA AGTGGGACCC 
    GCACAGTTAT TCCAACATGG GAACAGCTGT CTTTCCGCGT GGATTCTGTT 
    GTACTCCTCT TCACTCTCTC TCTCTCTATT TCTTCTTTGA CGTTTTTACC 
    CCTGCCGTTT TTCACTCTTT CTTTTTCTTC TTTTTATTTT TGTTCTAAAC 
    GTTTTAAAAA CAAAATTGTA TTAAAAAAAA AAAACCNCCC NNGNNTTNTT 
    NNACNTTNCN NCCCGNGNNG GGNNAANTNA AAAAAGNNGC CCAANTTTNT 
    AACNTTAAAA AAAANAAAAA AAANNNTNCC CGNAAAATTT NNTTTNAAAA 
    AAANCTNTTT TAAAAAAANN GGGNTTNNNC CTTTNAAAAA NNTTNNGNNA 
    ANAANANTTT NAANNAAAAG NNCCCNTCCC NCCNNNNNNN AAANAATTTN 
    AANGGGGNAA ANNANTTTTT NCCNCNAAAA AANAAAATTT TAAAANNTTN 
    TTTNNNTCCN NANAANNNNT TAAANAAANC NAANTTTTTT TTTTGGNCCN 
    GGNANTTGGN NCGGGGCCCT TNGCCCCACT GGGNAANGGA NAANCCTNNN 
    CCCAAAATTT TNANCCNCTN TNTGAGANNN CNGGAAANNG GGNGGGGNNN 
    TTTTTNAAAA AAAAAAAAAN NGGGGGCCGG GGGNTATTAA ANCCCCCCTC 
    CAAAGAGGGG GGGGNGGAAG GGANANAACN AANNAACAAN NGGGGGNGGN 
    AAAANAGNNN C

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2758914 [Map]; Strand: w
      • AT3G09032.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -817; Region: promoter
      • AT3G09035.1 - [+] show detail - Concanavalin A-like lectin family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-0966-1 - 3-prime edge 
    TTGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTT 
    ATACAGCTAA TTGACACAAA AAGTAAATAT CATCTTCTGG AGAAAGCAGA 
    GACATTGATT CGCCCTCACA GACACACTCA CTTTCTCTCT CTGTCTTAGT 
    AGTGGTTGCT GACTAAGGTT GATTTTAGTA CCATTAAGTT TTGCCTTATA 
    CGCAGTTAGA ATTAGTATAA ATTATTTACA TATCTAAGGA CAGATCGATT 
    GTTCAAATCT ATAAATAGTA CTAATGTAAA CTAACTATTT TTTTTTTTNG 
    GTNANNAANC TNCCNTTNAN NGTTAAAGGG NCGGATNNNA NTTGGGTTAA 
    NAANCTNCCC TTAAANANTT NNAAAGGGGT TTAGNAAAAC CCTANTANTN 
    NANNAAAAGG GGGGTTNNTT NTNTTTTTNC TTTAAAAAAA NNACCAAAAN 
    CTTNNNACTN NTTCCNCNAN CNAANANTNC CNTNGANNAN CCANTCNTCT 
    TCCCCNNNAT NNNNANNANN NTTNGTTAAA NTNGCNNTNT CCAAAATTTN 
    GTTAAAGGTG GCNNTNATTT TTTNNTTAAT NCCCNCATGT NNNGGNGGGN 
    NCCNCTTTNN AANAAGGGAA AANCNGGGNA AAANAAAAAA AAAATTTTNC 
    NNTAAACCCC NNCNTCCCCT AATCCCCCAT TTTNCATTTT NAAAAGNAAA 
    AAATGGGGGG TANANGGTTT CAATTTTTAN AAAGGGGGGN AACCNGNCCC 
    CCCCNTTTTT TTTTNTTTTA NATTTTCCCC NANTGNTTTT TTTGTTTTTA 
    ANCCCCCCCT NANNTGNGCT

AT3G07360.1

Model type
Protein coding
Short Description
plant U-box 9
Curator Summary
Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.
Computational Description
plant U-box 9 (PUB9); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 3234 Blast hits to 3002 proteins in 224 species: Archae - 0; Bacteria - 16; Metazoa - 312; Fungi - 206; Plants - 2395; Viruses - 3; Other Eukaryotes - 302 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07360.2

Model type
Protein coding
Short Description
plant U-box 9
Curator Summary
The protein that is predicted to be encoded by this gene model lacks the U-box domain identified in the AT3G07360.1 gene model.
Computational Description
plant U-box 9 (PUB9); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 1558 Blast hits to 1409 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 155; Plants - 1258; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07360.3

Model type
Protein coding
Short Description
plant U-box 9
Curator Summary
The protein that is predicted to be encoded by this gene model lacks the U-box domain identified in the AT3G07360.1 gene model.
Computational Description
plant U-box 9 (PUB9); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09032.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01225.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09035.1

Model type
Protein coding
Short Description
Concanavalin A-like lectin family protein
Computational Description
Concanavalin A-like lectin family protein; FUNCTIONS IN: carbohydrate binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin family protein (TAIR:AT3G09190.1); Has 816 Blast hits to 814 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 813; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR