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11-0974-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9190370 [Map]; Strand: c
      • AT4G16230.1 - [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
        Distance: 3591; Region: intergenic
      • AT4G16235.1 - [+] show detail - pre-tRNA
        Distance: -1206; Region: intergenic
    Flanking Genome Sequence: 11-0974-1 - 5-prime edge 
    GGTGCAGGTA TAGAAAGTCT AGTCATATAA ATCTTACGGT GCAAATTAAG 
    TTAACCAACT TGTTCTCATT TTAATGATAG TTAAGGTGCT TTCAAAGAAG 
    ATAAGCCAGT GGGATATATT TCATATTTCT CCTTGGTTTA ATTATATAAG 
    CCTAACTAGA TTATAACCCG CGGTACACCG TGGAGACAAT TTTTTTTTAT 
    AACTAATATA TATAAAAGTC TGCAAATTAT ATTTATCTAT TATCTACATA 
    TATATTTTTG CAGCAATTTT GTGAAATAAA TCCTGGAGTT GAAATTTATT 
    TACAATGCCT GCCACTGGCA TTTATTATTT AGTTAAAAAA ATCAAAAAAN 
    ATATTAACCA AACTATATCT TGCCTAATTT GTTTCTAAAA ATCTCTACAC 
    AATCTTTTCA TATATNTTTT TAAAAAAAAT CGNGAATTTT ACTTCACAAA 
    ATATGCNTAA ATCCNATTTA TAGCAAATAT TTNTATCAAC ATTTTGCATA 
    GCAATAAAAA TACTAATTTN TANTAATAAA ATATCCCCAT AAAAAATCNT 
    NTCCCCNTNC CTGGAAAAAA ACTNTTTTTT TCNTCTTTTA AACNACCCNG 
    GGCCNNTNAC CACGCGGGCN CCTAAANNAN NNATNNCNTN NCCAGGCNGC 
    NNNNNGNGAA NGGGNGANAN NCCGAANNGC GNNNCCGCNN ANNCAAATNC 
    ANAGANAAAA ANCNNCNNGC NNNANNCNNN NNGNNGAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9190486 [Map]; Strand: c
      • AT4G16230.1 - [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
        Distance: 3707; Region: intergenic
      • AT4G16235.1 - [+] show detail - pre-tRNA
        Distance: -1090; Region: intergenic
    Flanking Genome Sequence: 11-0974-1 - 3-prime edge 
    CCTGCACCAA GGAGAAACGA AAAGTATATT CACTTGTCTT ATCTTCTTTT 
    AAAAAGCATT TTAACTATAG TGTTTCGAGG TTAACTTAAT TTGCTTCAAA 
    GGATAAGTGA GTACGTAGTT GCATCTAGTT TTGATACNGT TATTTTTATT 
    TCATCACTTT TGAATGTAAC CAGTGATGGC TCTGTTGAAT TTTTCTTTAC 
    TTCTTTTTTA TTAGAGTCAT ATATCCGTGC TTTGGTATGA GGAGAACAAA 
    TTTAAAAAAA AAAAAAAAAC CCCCCCTNGG GGNCTTTNAA AAAAANCCCC 
    CCCNCNNAAN CCCGNNNNAA NNNCCNAANT TTTNGGGNNN AAANCNNCNN 
    CCCGGGNCNN NAANCNCCCN NGNCCCNTNN AAA

AT4G16230.1

Model type
Protein coding
Short Description
GDSL-like Lipase/Acylhydrolase superfamily protein
Computational Description
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G50400.1); Has 3023 Blast hits to 3001 proteins in 82 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 4; Plants - 2958; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16235.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Val (anticodon: TAC)
Link
InterPro Scan - TAIR