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11-0979-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4327868 [Map]; Strand: w
      • AT1G12710.1 - [+] show detail - phloem protein 2-A12
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-0979-1 - 5-prime edge 
    CNTTGATAAA ACTAACAAAA TCGGTTATAC GATAACGGTC GGTACGGGAT 
    TTTCCCATCC TACTTTCATC CTCAAAACTC GTCTATGATG ATTCTTGATT 
    GAAAAAGTTT CCAATTTAAG AAAAAAATCT TAACTTTTAC ATATAAACCT 
    GGAAAAAGAA GAAACAGAGA GAGAGAGAGT GTGTGAAGAG CGAACCTTGG 
    TGGCATCATC GAATGAGTTA ATCCTGGAGA GAAAAGCATA AAGGTGTCTT 
    TTTTGCAAAT TTTCAGGGAA GCCACCAAGG ATTTTCTCGA GAACATCTCT 
    GTNATTCTGA GGAAGTTTCG ATTCCCAAAC ACAATCAGCC CNAGAAGCCC 
    CGCCGAAATG CCTCTATTGA GCTTTGAGAA TCTACAGATC TNAACNGGAT 
    AANCAGACCN GGNNGNNGNG NNCCCGCGCC CTNCTNGNGN GTCNCNNNNA 
    NGNGGGGNAN NCCCCGNGCG CGGNCCCACC NGNCGCCNCN GGGNGGGCGG 
    GGGGGCNGCC GCGCCGCGCG NCGCGNTCGN NNNNNCGNNN CNNANGGCCN 
    NNNGCGNCGN GCGANCGGGA NCNNNNGNNT CGNTNNNTCN TCNNANGNNA 
    NNNANNNCNG ANCGGGNGNC GNNGNCGCNG GNCNNANGTC CNGNTCGCGN 
    GTCGNGGNAC GNGNNNCNCT GTCNNANANA NNNCNCCNNC GNCNANNNCC 
    CCGGNNCGCN NGCGCNGNGG CCGTNCANAG NTNNNNTGCT CGGNNNCGCN 
    CGNNCNNNNC NCNCGGTATN CGCNTNGCNN GNCNTCNGNN NNNCNNCNNN 
    NNCGCCTNCN CNTNCTANCN TTGCANCNGT NTNCTNCGTT GCNGTCNNNC 
    TNNNCGTCNA ANNT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4327846 [Map]; Strand: w
      • AT1G12710.1 - [+] show detail - phloem protein 2-A12
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-0979-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAT 
    AGATAAACGA ACCAGTGGTG TTTGTCTATC CATTTCAGCC AAAGGATTAT 
    CCATTACAGG CATTGATGAT CGTAGATATT GGAGTCATAT CCCCACTGAT 
    GAATCTCGGT GAGTTTTTGT GTCTTTAGAT TATAATTATC TAATGGGAAT 
    CATCTGTGGC ATGTACTTGC TTGATTTGAT TGCTTAACAC TAACTCAGTT 
    CTTGCAAAAG TATGCTTCAT TTGTACGTTA ACTTGTGTGT TTGTTGGATT 
    GTCTAACACA AGCTCTTCAA AAGTGTGCTT TTGTAAACCT GAAATTGTGT 
    TTTGATCATG TGGTTTCAGG TTTGAGCTTT TCGGTGATCT GAGTTTATTA 
    CCATGTGTTA GACTCCTTTG TACAATTAGA TATCTGTCAT GTTCTTATCA 
    GAGTTTGGAT ACATGTTATG GTCTAACATT CATTGGTGCT TGCAGGTTTT 
    CTTCTGTAGC TTATCTCCAA CAAATCTGGT GGTTTGAAGT TGATGGTGAA 
    ATCGATTTCC CATTCCCGGT TGGAACCTAC AGCATTTTCT TCAGGCTTCA 
    ATTANGCCGG NCGGGCAAGT GGGTTTGGTC GACGGGTCTG TAACACANAA 
    CAAGTCCATG GGTTGGGACA TTAAACCGGN TCNATTTCAA CNTCTGGACT 
    GAANANGGGN CAATNTTCCN NNNCTCAATG NNTGTTACTG ANCGGGGAAA 
    CTGGATNATT ACCCCCCCNG AACNTTNNTG NCNGGAATNN AANAGGNNTN 
    NNCNAAAAAN AANTT

AT1G12710.1

Model type
Protein coding
Short Description
phloem protein 2-A12
Curator Summary
This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber, suggesting that this protein could potentially have carbohydrate binding capabilities.
Computational Description
phloem protein 2-A12 (PP2-A12); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: phloem protein 2-A11 (TAIR:AT1G63090.1); Has 458 Blast hits to 452 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 456; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR