1. Home
  2. Mutant Lines
  3. 11-0988-1

11-0988-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9558149 [Map]; Strand: w
      • AT1G27510.1 - [+] show detail - Protein of unknown function (DUF3506)
        Distance: 0; Region: exon1 (CDS)
      • AT1G27520.1 - [+] show detail - Glycosyl hydrolase family 47 protein
        Distance: -486; Region: promoter
    Flanking Genome Sequence: 11-0988-1 - 3-prime edge 
    ACTCTCGACC AACAAACGCN CAAATTTCTC CGTATCTATC GGTCTACGAC 
    ATTCCTTCGC TTCTTCTATA TCAACCTGGA ACCCTAAAGC CCCATCTTTA 
    AGCTGTCTGC GAAATTGCGC CGCCTGTTGA TGGAGCNTGA TACCAGTTCG 
    TGTGAGGGTA AGTGGGATTG GGATTGGGAT CGTTGGAACC GTCACTTCTC 
    CGAGATTGAA GAAGTCGAGA GCNTTGTTTC TCTTCTCAAG GTTCTATCCA 
    TCTAAACTCT GTCTACTATT GATGATTTTT TGTTCGATTA TTGGTTGATT 
    ATAGATTTCT AAATTTGGAG TCTTCTAGCT TATGTAACAG TCTCAACTTG 
    AGGATGCTGT TGAAAAAGAA GACTTTGAAG AAGCAGTCAA GTTGAAACAA 
    GCTATTTCAG AAGCTACTGT TGATGATGCT GTCGCTGAGA TCATGCGCCA 
    GTTACAGGTT TATATATGTT TTTTTTTTTA TNANATNAAA CNNTNATGTN 
    ANCCTTCTNA CTNANATANN AAAAACTCCN TTGCAAACNG NGGTAAACAA 
    ANAGCGTTNC CANNANGNNN CCAGGGTTTT GTANCNNAAA CAGGAAGNGG 
    ACGGGNAATT TTGGTTNCCC GNCCCCNTAA ANCCTNGNCC TTNCTGGTTA 
    ACCNGGAAAA ANTTACNNNN ACANCNCTTA NNNATTTGGA ATNNAGAAAA 
    NNGGGNTANG TGCNNGNAAA ATATTAAGGG NANTNAAGGG GNCGTNGAAG 
    ANNNTAAANG TTCCCNNNAN NA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9558264 [Map]; Strand: w
      • AT1G27510.1 - [+] show detail - Protein of unknown function (DUF3506)
        Distance: 0; Region: exon1 (CDS)
      • AT1G27520.1 - [+] show detail - Glycosyl hydrolase family 47 protein
        Distance: -371; Region: promoter
    Flanking Genome Sequence: 11-0988-1 - 5-prime edge 
    CTCGAGAGCT CCGGCTTTAG AGAATTTCTG GGGCTGAAGA GGATGTGAAA 
    TTGAGGAACA GCGATTATTT GGCCGATAAG ACATGGTTGA GTTGTCGCCA 
    TCGGAGGACG TTATCACCGG AATCTCTCAC CGTGCNTGAG AGGCTTTGCT 
    TTAGTTTTTG ACACCTCAGG ACATGTATGG ATGGATAGGG GACGAAGGTT 
    TTAACTTTTA ACTTTAGTTA GAGATGGTTC AAGGGCAATT TGGTAAACTA 
    CCAATGCAAA GGCTGAGTTT TTCTTATTTT CCTATGATTT TTGGGTTTTT 
    TTTGGTTCTG GTATTTTCAC TTTTTGGGAA CCAACCAATC AATATCTTTT 
    AAAATTTTAT AATATTTTCT GCTCTTTGAC TTTCGTTTTT TACCAAAAGG 
    GCAAAATGGT AATTGGAAAN AAGGGAACAA ATCCCCNNTT GGANAAAAAC 
    TGACGTTGTT CTAATCGANA NATCANACCC GGCGGANACT GGCGGANATG 
    ATNAATNACC ANCCCGGGCC GNNGACCACN CNTGCCCTNT A

AT1G27510.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3506)
Computational Description
FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: response to singlet oxygen; LOCATED IN: thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3506 (InterPro:IPR021894), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3506) (TAIR:AT4G33630.2); Has 287 Blast hits to 280 proteins in 95 species: Archae - 0; Bacteria - 15; Metazoa - 66; Fungi - 43; Plants - 121; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G27520.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 47 protein
Computational Description
Glycosyl hydrolase family 47 protein; FUNCTIONS IN: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 47 protein (TAIR:AT5G43710.1); Has 2179 Blast hits to 1853 proteins in 199 species: Archae - 0; Bacteria - 11; Metazoa - 788; Fungi - 990; Plants - 198; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
Link
InterPro Scan - TAIR