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11-1009-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1258484 [Map]; Strand: c
      • AT1G04580.1 - [+] show detail - aldehyde oxidase 4
        Distance: -974; Region: promoter
    Flanking Genome Sequence: 11-1009-1 - 5-prime edge
    CTCAACATCC AACGATCTGA ACCAACTACC ATCCAAACCA ATAACATCGT 
    CTAAAACCTA CAAACTGATT GAATAAAAAG ATAAGCTAGG GAAGGTATCA
    TAGTGGTTCG GTACNGGTTT GAATTGGTTA GATGAGATTG GACCCCTACC
    GAAAATAGAG TCTTCGGTTA CATTTGGTTT AATAACAAGT TCATTTGAAA
    GTTAAGAAAA TAACTAGTAT TCGAATTTAG AGATTGCGGG AGATTGTATG
    TTCATTCGAA ATACAGTACA GAGATGCTTC GATTCCAGAT CTGCGTCCGG
    TCTCTAATGG CCATTCGATT CTCGACCAAA GAGGGAATCT TTCGGGATGG
    GTTGATTTGT GGGAAGTGGG AACCAAACGG AATGGGAAGA CGGAAGAGGA
    AAGGTTTAGG AGAAATCAAT CAGACCTCCA AGGCCAAAGT CACCTTCCGA
    TTTAGGTAAA GCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1258600 [Map]; Strand: c
      • AT1G04590.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) su...
        Distance: 0; Region: exon9 (3UTR)
      • AT1G04590.2 - [+] show detail - BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) su...
        Distance: 0; Region: exon9 (3UTR)
    Flanking Genome Sequence: 11-1009-1 - 3-prime edge
    ATGTTGAGTG TGTCGAAAAC TTCAGATGTA GATGTGATTT TGTTATCTTA 
    TTTCTCAGTA ATACTAGTGC CGCACTCAAA CCCTAAACTC TATATCCATC
    CATTGCGACA AATCCCAAGG GATGTGAGCA TTGTCAACAA TCCATCGATT
    AAATACATCC TTACAGTCCA TGTTTCTCTT GCAGTGATAC TTTATCGATT
    AAATACTACA ACTTACGCTC CATGTTCGAA TTGTTTTTCA GTGGCAGCTT
    CTGATTCTTG GTGATTATCC AGATTTTCTT TTCGCTCTTC TTGGATTTCA
    GCTTTTGCTG CATCAACTGC GCCTTCTGTG GTTGCTTCTG GAATCCTCAG
    TTCTGAAATC ACAAATTAGA CAGTTTAAAA CTTATCCTGT TTTGCGCAAG
    AATCTATAGC ACATGAGTTC AATATCAAAC GGCTTTAAAG ATGGTTGAAG
    ATATCAATGG CTAAATCGCA ATCACCTACC TGGTTTCTTC TTCTTCCTCG
    AAGATCTACT TGGTTTATCA TCCGATGGTG TACCAAGTAA AAGATGGCTA
    TACTTCGTCA CTACCCGTTC TTTCTCATCA AGCATTCCCA AAAGCTCATA
    AGCATCAGCC ACGGTCTGCA CAATGTGCTT GTCCGGANGC TTACNGGCAT
    AACTCTCCAN ATCCTTGAAT AGCTTCATAA CCCACATAAC AAACAAACAC
    AAGTTTGAGG TCACCACGAA ATAAAGTAAC TTACTAGTCA GTTAAGTNTC
    AATGGGCAAN GT

AT1G04580.1

Model type
Protein coding
Short Description
aldehyde oxidase 4
Curator Summary
Encodes aldehyde oxidase AAO4 preferentially expressed in developing seeds.
Computational Description
aldehyde oxidase 4 (AO4); CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase (InterPro:IPR016208), Ferredoxin (InterPro:IPR001041), Molybdopterin dehydrogenase, FAD-binding (InterPro:IPR002346), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), [2Fe-2S]-binding (InterPro:IPR002888), FAD-binding, type 2 (InterPro:IPR016166), CO dehydrogenase flavoprotein, C-terminal (InterPro:IPR005107), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 (InterPro:IPR016169), Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead (InterPro:IPR000674), Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: abscisic aldehyde oxidase 3 (TAIR:AT2G27150.2); Has 17858 Blast hits to 17128 proteins in 1274 species: Archae - 410; Bacteria - 10596; Metazoa - 1017; Fungi - 119; Plants - 281; Viruses - 0; Other Eukaryotes - 5435 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04590.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04590.2

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18975.4); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR