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11-1015-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 98931 [Map]; Strand: c
      • AT5G01240.1 - [+] show detail - like AUXIN RESISTANT 1
        Distance: 0; Region: exon4 (CDS)
      • AT5G01240.2 - [+] show detail - like AUXIN RESISTANT 1
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-1015-1 - 5-prime edge 
    CTTTGATAAA ACTAACAAAA TCGGTTATAC GATAACGGTC GGTACGGGAT 
    TTTCCCATCC TACTTTCATC CACTTCCCAT TTTTTTATTT TATTTTTTTT 
    GTGTTAAGAA AACAAAACAA ACATGCAATT CAATTTAGTA AATCTAAAAG 
    TGAGATCAAA TTCGAATATG TCACCTAAAC TAAAATAAGG AAGAATTTAC 
    CTTGAATAAC GTGGTTTTTG AAGGATTTGG CTTCTTGTTT CTCCATACGG 
    GCACGATACT CGACGTAAAG AACACTGATG AGATAAGCAG TCCAAGATCC 
    CATTAACCCA TAGAATATTT GAAGCAATAT TCCTGATAAC ATTCCCAACT 
    GCGAGAACGA ATACGGCAGC GTCAACAGCA CTTGTGCCAC CTGCAACCAT 
    ATATTTTTGT TTTTATAACT TAAGTTGTTA TTTATTTCAA NAATGTTTTA 
    TGAAAGAATA TTAAAAAAAA ACTTTAGGAC AAACGAAAAA ANAGTAATTN 
    GGTCTTATTA TAATAAANAA ACATTNGTTT TCTTATAGTA AATATTACTA 
    CTANANGAAT TATTCATTAT CGAAATTGNA CTTACTNGAT TNGANGCACA 
    GCTAAACCAG GCGGTNCNAN GCGGACCCGC CATGCCAGAG GAAGCTCTTC 
    ATACTAAATC CATTGCCCCC GTGCCGTCAA TNTCCTCCTC CGCCCGCTGA 
    NTNTTCCACT TTTTACNGGC CACCTNATNC TCCCGGNGAC TACTTATGAC 
    CCCCCGCTTG NTTTTCACCC GNNNTTAGCA NTNGTTNTNG GGCGGNCCCC 
    AANAATNTTT TTTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 98982 [Map]; Strand: c
      • AT5G01240.1 - [+] show detail - like AUXIN RESISTANT 1
        Distance: 0; Region: exon4 (CDS)
      • AT5G01240.2 - [+] show detail - like AUXIN RESISTANT 1
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-1015-1 - 3-prime edge 
    GAACTTTGAA GTGCTTGATG GGCTGCTGGG TCCGTACTGG AAAGCAGCGG 
    GGCTCGCATT TAATTGCACC TTCTTGTTAT TCGGATCAGT CATCCAGCTC 
    ATTGCTTGTG CTAGGTACTT CTTCCTCTCT TTTTTATTGC TTTTTACCAA 
    TCTTTTTAAT AGTATATTGA TATAGAGGGA CAAATACATA TATCTAAATG 
    ATATCATCAA TTGATTCATG TGTGTGTGTG TTGTTGGGAT GATGCAGCAA 
    TATATATTAC ATAAACGATA GGTTAGACAA GAGGACATGG ACTTATATAT 
    TTGGGGCTTG TTGTGCCACG ACCGTTTTCG TACCATCTTT CCACAATTAC 
    CGTATTTGGT CTTTCCTCGG CCTTGGCATG ACCACCTACA CCGCTTGGTA 
    CCTCACCATC GCCGCTTTTC TCCATGGTCA GGTATGTCCT CATCAATATC 
    AAATGATTTA AATGAAGAAA AAACAATGTG ACTTAAACCG GTTGTAACTT 
    ACTGGTTTGT AGGCGGAGGG TGTGACACAT TCCGGTCCGA CCAAGCTACC 
    ANCCNGGGCC GNNNACCACC CNTNCCCTAA

AT5G01240.1

Model type
Protein coding
Short Description
like AUXIN RESISTANT 1
Curator Summary
Encodes LAX1 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers. Required for the establishment of embryonic root cell organization.
Computational Description
like AUXIN RESISTANT 1 (LAX1); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G38120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01240.2

Model type
Protein coding
Short Description
like AUXIN RESISTANT 1
Curator Summary
Encodes LAX1 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers. Required for the establishment of embryonic root cell organization.
Computational Description
like AUXIN RESISTANT 1 (LAX1); FUNCTIONS IN: transporter activity; INVOLVED IN: amino acid transport, root cap development; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G38120.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR