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11-1036-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 886227 [Map]; Strand: c
      • AT4G02020.1 - [+] show detail - SET domain-containing protein
        Distance: -373; Region: promoter
    Flanking Genome Sequence: 11-1036-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ATGATTTGTG 
    TGGCTTTAGA AACTTTGACG TTAACAATAC TAGCCATTGA GGCTAAGAAT 
    ATTAGCTGTA AAGTAAAAAT CTCTGAGCGT AAAGATTTAA ACTGTAAAGA 
    TTTTTTTTTT TNANCANATN TTNCCTTNTT NNAANCTNGN AANGGGNAAN 
    CCAAATTTNT TTNTANCCNN ANGGGGGGNC CAAAAAATNA ATNANCNGNC 
    CCTTTTTAAA NAAAANNNCC CCNCCNGCTT TTTTTNCCCA ATNAANNTNN 
    CCTANGGAAA AAAACGGAAN CTNCCACCCC GGNCCGNAAN CCNCCCNNGC 
    CCTTNNGGGN GTNNNNNNCC CCCCCCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 886265 [Map]; Strand: c
      • AT4G02020.1 - [+] show detail - SET domain-containing protein
        Distance: -335; Region: promoter
    Flanking Genome Sequence: 11-1036-1 - 3-prime edge 
    TTTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTA 
    GTTACCTTTA AGATAAAATA CAATTATAAT CACAAATATC TTAATATTTT 
    TACGTTTAGA GTTTATTACT TTACAACTAA TACTTATCTC AAACGTAACT 
    GCTATAACCT GTGTGGCTCT AGAGACTTTG ACGTTAATAA TATTAGCCAT 
    TATTAGCCTC AACGGCTCCA GAGCCAGGCA TGTCGTAATA GTTATCTTTA 
    AGATAACATA CAATTATAAT CACAAATAGA AAATAATTGT CGCAAAACCA 
    CTAATTAAAT TACACACGTA TAAGCACTAT TCATTCACAC GTGTGGCGTT 
    CTTTGTATGT AATGTAACCC CCCTTCCAGT CCACACTCCG TTCGTCCTTC 
    TCACAAGTCT GATTGCGGAA AAAGCAGAGA GAGAGAGAAA GTTCGAGCGG 
    AAGAGAAGCG GAAAGCTCGN GGAGTCATCA ANGGTGACGG NCGATAGCAA 
    ACTCCTCTGG ACGAATTCGT ACTNAGATTG ACCTTNGAAN GTNGTGTNTT 
    TTNNNGTTTN NNGGGANNNA NNATCNANNA ATNTGNGTNG NTTNGGNCCC 
    NNNNTAACNT CCNGCGNTTC TTTCGGNNNN NNGNCTNGNG NGANAACNNN 
    NNTTGANTGC CANNAAATAA NATACACNCC CGNTNNTNCT NNNTANTCAA 
    TGGNGGNNNN GANANNNNCC CTCTTAANNC TAAGGNNTGT NTCNCNNGCG 
    CTGNNNNGNG TGNNANNCNN GANANNNTNN NCCGANNNGG NNGGCNCNNN 
    NACAN

AT4G02020.1

Model type
Protein coding
Short Description
SET domain-containing protein
Curator Summary
Encodes a polycomb group protein. Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE) and CURLY LEAF (CLF). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. Performs a partially redundant role to MEA in controlling seed initiation by helping to suppress central cell nucleusendosperm proliferation within the FG.
Computational Description
SWINGER (SWN); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT2G23380.1); Has 5041 Blast hits to 4734 proteins in 465 species: Archae - 0; Bacteria - 399; Metazoa - 2132; Fungi - 472; Plants - 1030; Viruses - 0; Other Eukaryotes - 1008 (source: NCBI BLink).
Link
InterPro Scan - TAIR