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11-1040-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 806820 [Map]; Strand: c
      • AT1G03280.1 - [+] show detail - Transcription factor TFIIE, alpha subunit
        Distance: 0; Region: exon11 (3UTR)
      • AT1G03290.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -541; Region: promoter
      • AT1G03290.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -576; Region: promoter
    Flanking Genome Sequence: 11-1040-1 - 3-prime edge 
    ATNAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGAT 
    AAACTATAAT GATTAATGAC TTTTAGTATC TCACCATCTA CACCAAAGGT 
    TGATTTATCT GTGAAACAAA AATGGTTTTA TGGTTTTGGA CAAAAGTCCA 
    ATTTACAAGG GTGTTACTGT TAAGTGTTGT TGTTTATAAT TCTGTTGGGA 
    AATATTTATG GCGATATTTG ACATGTGGTT AAGTGTATTT TTGAATTAAT 
    CTCTCTTTTT GTAATTTTTG TTTCTTTTTN CCGTAAAAAT TTAGAATTAA 
    AATCTGTTGA GAAATAGATT CCACNCATAA CGGTCCATTT GCTTCATCCA 
    GAAAAATATT GGGAAAACCT ATTAATTCNA GNTTATTTTT GTAAATAAAA 
    TAAACAACCA GNCCCATCNT TANTTTAAAG GNCCCTTTCC CCAAGTTCCC 
    CCCAAAATTC CCANTTAAAA AAAAATAATN TTTGNCCCTG CCCCTTGGGT 
    TGNNNCCNTT GGACCCCAAC CCCNAAAANG CCCCCCNCCN NNNNAANNNN 
    NNNAGGAAGN TGGCCCGAGG NNCCCNTNNN NTNCCCCCAC CAAANTTNNN 
    NNTNCCCCCC CNNCANCCGA AATTTATCCC CNTCNGNNGT TNNCCTTNNN 
    NANNNGGNGC CNGANCTTTT NNTANAAAAN NGNNCCCCCN CCCCNNNCNA 
    AANCCTNCCN CNACNCNNCC TTCNNTNCNT NNTNNCNCCC CCNAAANNNC 
    AATNNTTTTN CTNACNCCCC CTCCNNNGNT ANACCNCCNN NNNNCNNNNG 
    CANANATNNA CAC

AT1G03280.1

Model type
Protein coding
Short Description
Transcription factor TFIIE, alpha subunit
Computational Description
Transcription factor TFIIE, alpha subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: endomembrane system, transcription factor TFIIE complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIE, alpha subunit (InterPro:IPR002853), Transcription factor TFE/TFIIEalpha, HTH domain (InterPro:IPR017919); BEST Arabidopsis thaliana protein match is: Transcription factor TFIIE, alpha subunit (TAIR:AT4G20340.1); Has 759 Blast hits to 706 proteins in 191 species: Archae - 5; Bacteria - 10; Metazoa - 313; Fungi - 190; Plants - 108; Viruses - 11; Other Eukaryotes - 122 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G03290.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2); Has 13587 Blast hits to 10183 proteins in 1114 species: Archae - 257; Bacteria - 2402; Metazoa - 5637; Fungi - 960; Plants - 675; Viruses - 54; Other Eukaryotes - 3602 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G03290.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2).
Link
InterPro Scan - TAIR