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11-1066-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1681494 [Map]; Strand: c
      • AT1G05620.1 - [+] show detail - uridine-ribohydrolase 2
        Distance: 0; Region: exon9 (CDS)
      • AT1G05620.2 - [+] show detail - uridine-ribohydrolase 2
        Distance: 0; Region: exon8 (CDS)
      • AT1G05630.1 - [+] show detail - Endonuclease/exonuclease/phosphatase family protein
        Distance: -824; Region: promoter
      • AT1G05630.2 - [+] show detail - Endonuclease/exonuclease/phosphatase family protein
        Distance: -953; Region: promoter
    Flanking Genome Sequence: 11-1066-1 - 5-prime edge 
    TNATANNACN AACAAAATCG GNTATNCTGA TAACAGGTCG GTACGGGATT 
    TTCCCATNCT ACTAGTCATC CCTGNNCAGG AGCCNNAACC GAGCGTGCCA 
    CANTNTANNC GGNGGTATTG TCTGACCACT CGTTCGCTTC CTCAAACCTG 
    GTTCACATCA CAACAACAAG TTTTTTTCCA TCACCACACA TGACATTTAC 
    ATCCTCTATT ATATATAACA CAACTGTCTA TTTTGAATGT TTGTATTGTA 
    TGTATGAAAA AAACTTACCT CTTAAGATTG TTGTACAGTA AAGTGAGTCC 
    CCTAGTGATA CCACTTGTCT GCACTCTAGC AACTCCTTCT GTATAAGTGA 
    ATAGAGAAGG AAGGAAAGCC GCAAGGATCG TCGCAGGATC ATGAAGGTAC 
    ACACCTGCCC CCCACACACA CAAAAAAGAA GAGGTTAAGA TAAAAATACG 
    TAGTCGTGGA AATTCTTGTN ATATAATTTT GTGTACAACT GAACTTATTA 
    CCAAATGAAA TAAACACACA TACAAATGAT TATCATTATC GTACCTTTGA 
    TTTCGNAAGC CGTGAGATGA TAATCATAGT ACACATCAAG GATTTTACAG 
    ANATATTGAN CTAATTTCCC CTTCNAAGAT GCTAGTNTNC CCTTGTCATC 
    AGCTAAATCC AGCAGAAACC ACCGGGGNAA AAAAGCCATT ACAAAGCTCT 
    GTTTAACTAA ANTATGGTNT TGGTNGCAAC NANGAAATGA AAACCNNGAA 
    GTNTTNTNTC TCAATNTGGA TNCTTTCAAA GAATTTCCNA AANCTTCTNT 
    TANCGGATTN CACAAAGGAT ATGAAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1681501 [Map]; Strand: c
      • AT1G05620.1 - [+] show detail - uridine-ribohydrolase 2
        Distance: 0; Region: exon9 (CDS)
      • AT1G05620.2 - [+] show detail - uridine-ribohydrolase 2
        Distance: 0; Region: exon8 (CDS)
      • AT1G05630.1 - [+] show detail - Endonuclease/exonuclease/phosphatase family protein
        Distance: -817; Region: promoter
      • AT1G05630.2 - [+] show detail - Endonuclease/exonuclease/phosphatase family protein
        Distance: -946; Region: promoter
    Flanking Genome Sequence: 11-1066-1 - 3-prime edge 
    NNNTCCGNAC CAGACCCGTN TTCNTCCCTA CTNNTGCAGT CNNGATGCTC 
    TTTGTGGAGN NGCTNCTGGA GTCNTAGNCC ATCNTGGGTC GTTNATTTGN 
    AAGGCTNNNT NTCTTTGNTG GTNCACTATA CNCCANCCGT CCCTTTTGTT 
    AAAAATAAGG CTCCTCTTGC TGCATTATTT ATTTATTGTT TAATCTTTAT 
    TAAANCGAAT ATTATTATGT TACCAATTAC CANTAATAAA GTTAAGATTT 
    TTCCTCCGAT TNCATGACTC TTCTACTACA TTCAAATCTG NCACATGATT 
    GTCCCACTCT GATCCTAGNA AGGAACATGA CANGTNGTAA CATTTANGAC 
    ATTTTGATAT TAACTACAAC AGCTGGAATA NAANAAATCT TGAGAAAAGN 
    NNNTCACACA TTCATTACTT AACTGACGAA TGATATTATA TGAAAAGAAA 
    ACATTTAATA GTGCTATCTN AAGATANAAA ATGCAATTTA TNGAAATTTC 
    ATATNGCCTG CCTNATTTGN ANAATAATGT CTGCCTATTT GCCGAANTAA 
    GATGCCCATN CATTCNCTTC TTCGCACTGA TCTCGCNTGT NAGATAATTN 
    NCANTATTAT NNAAANTAAA CNNCATATTT NANNATNATT ATNTGNNNNT 
    CNTTGGNNCC TNNNTTTTAA TTNAANACAT NTACACACNN CNCCNCGCGG 
    CGCNCGNCNG NCGGNNNNAT NCTNTGTTNT CAGTTGTNNC GGCGCGGCCC 
    GCNTCAGNCT ANNNNNNCNN TNTNGTGCTN CNGANNCTCG CCNNNNNNNG 
    TGNCNTGTNT TT

AT1G05620.1

Model type
Protein coding
Short Description
uridine-ribohydrolase 2
Computational Description
uridine-ribohydrolase 2 (URH2); CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: uridine-ribohydrolase 1 (TAIR:AT2G36310.1); Has 6369 Blast hits to 6297 proteins in 1349 species: Archae - 75; Bacteria - 4652; Metazoa - 179; Fungi - 246; Plants - 186; Viruses - 0; Other Eukaryotes - 1031 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05620.2

Model type
Protein coding
Short Description
uridine-ribohydrolase 2
Computational Description
uridine-ribohydrolase 2 (URH2); FUNCTIONS IN: hydrolase activity, UDP-glucosyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: uridine-ribohydrolase 1 (TAIR:AT2G36310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05630.1

Model type
Protein coding
Short Description
Endonuclease/exonuclease/phosphatase family protein
Curator Summary
Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light
Computational Description
5PTASE13; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Inositol polyphosphate related phosphatase (InterPro:IPR000300), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G31830.1); Has 2865 Blast hits to 2115 proteins in 235 species: Archae - 0; Bacteria - 18; Metazoa - 1064; Fungi - 695; Plants - 755; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05630.2

Model type
Protein coding
Short Description
Endonuclease/exonuclease/phosphatase family protein
Curator Summary
Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light
Computational Description
5PTASE13; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G31830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR