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11-1070-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
stem (PO:0009047)
  • high saturation (PATO:0001229)
    (Stems::waxy)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::sterile)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3093870 [Map]; Strand: c
      • AT1G09560.1 - [+] show detail - germin-like protein 5
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-1070-1 - 5-prime edge 
    GACNGTGGGT GAGGAGGAGG ANGANANNNA GACCTGGTGA ACNCCCTTGC 
    GATTGNGGTG GTGGTGGTGG TGGGACTCTC TCTAAACAAG TAGTTGTTGA 
    GAGAGAAGAG AATTAATGAA TTATGGTTTA TAAAGGGAGG AGAATTGAAG 
    AATTGAAGAG AGGGTGACTT TTCTCGTTGA GGGAAAAAGC AAGCAACATG 
    CTGTTTTTCT TTCTTGCACA CATCTGTCTA AGTGAAATGT CAAAGGTCAA 
    CGAATTACTA AAACGGATGG ATCAGAGCTT TGCCAATTGA AAATTTATGT 
    TTACACTAGT TTTGCTTTTA CACGGTACTG ATATTATTTT TATTTAATTA 
    TTAGTGGCTT ATAAAAAACA ATTATCAATT TTTATCACCT AATAAAGTAT 
    GTATCAGGTA ATAAATGTTG TCTTATCTGC ATAAACTAAT TTTACTTGTT 
    GGCTTCTGTA TTTTGATCAT CGTGAGAGAA GAATCATTAT ATATTAACAC 
    GCTCGTTCAT GCCTCACCGT TAATCTGCAA CGTCCGCGTT TCAGGGTTAG 
    TTCTTCTCAC GCGAATCGTG AAGCGCGTGA AGCTACGCGT TGTCTTTAAT 
    GGGTTGGGTT TAGGTGATAA TACCCGATAC CGTTGGTTTG GGCTTTTTGG 
    TGTTAAAAGC CTCATCTAAT ACGACGCGTA ATGCATTG

AT1G09560.1

Model type
Protein coding
Short Description
germin-like protein 5
Curator Summary
germin-like protein (GLP5)
Computational Description
germin-like protein 5 (GLP5); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: response to cold; LOCATED IN: cell wall, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 10 (TAIR:AT3G62020.1); Has 1766 Blast hits to 1756 proteins in 200 species: Archae - 0; Bacteria - 219; Metazoa - 1; Fungi - 67; Plants - 1458; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Link
InterPro Scan - TAIR