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11-1072-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3516616 [Map]; Strand: w
      • AT1G10640.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-1072-1 - 5-prime edge 
    CTTACCGGCA TAGGAGGGTT TTGGTTAGCA GAATTGTTCA AAGGGACGAT 
    GAGTTTGGTA TCACTATCAA TGAAAGGAGA ATCTTGTTGC CACCAACCAG 
    AGCCTCTTCC ATCAATAACA CCTTTCCCTT GTACTTTAAT TCCTTTCAGC 
    TTTGTAAAAT CAATCCACCA CATTAACCCT TTTCCCCATG TCTTTGAATC 
    CGTTGGAGCT ATAATCGTAC CATCAAGCTG CATAATTCAC AACAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3516500 [Map]; Strand: w
      • AT1G10640.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 11-1072-1 - 3-prime edge 
    CCGGTAAGTT CATCGTCTTC TTCTTCACTG TCTCATTCAC AACACAATAT 
    TCATCTAAGA CCAAACTCTG TTTTGTTTTT ACATATGACA GATCAGAAGT 
    GAGCTTGATG AGAGAATGCC AAGCATTAAA CCAACGGTGA GAAATAGATA 
    TTGGCACNTG TGAGATTGTA AGCATTAGTT TGTTTACTGA TTTTTGTTTC 
    TGTTAGGCAT TGAGATTCTC TGGGAGTTTT GGTGTGGAAG TGACGGGTAT 
    AACGATACAA AACAGTCCTC AGTGTCACCT CAAATTCGAC GACTGCGTAG 
    GGGTTGTGGT GCATGACATA GCCGTTTCTT CACCTGGTGA CAGTCCAAAC 
    ACTGATGGAA TT

AT1G10640.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G60590.1); Has 4327 Blast hits to 4306 proteins in 507 species: Archae - 6; Bacteria - 1323; Metazoa - 14; Fungi - 1302; Plants - 1545; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
Link
InterPro Scan - TAIR