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11-1081-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20178878 [Map]; Strand: c
      • AT3G54500.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon1 (5UTR)
      • AT3G54500.4 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: intron1 (5UTR)
      • AT3G54500.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-relate...
        Distance: 0; Region: intron1 (5UTR)
      • AT3G54500.2 - [+] show detail - BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-relate...
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 11-1081-1 - 5-prime edge 
    NANGCAACGA NNCACACNNN CAGCCTCTAN ATCAGGNGNN GNNTAAACAG 
    NNNGGGGNNT NACCCACTGC GGGCCGTNTA GGAGGATTGC CGTATAGCGA 
    TTNGNNGATC TTGTNGTTTT TTCCTGGATT TTTTTCGTTG TGGAGCTGGC 
    GATGTGTGGA GCAATCAGGG AGCTTGATTT TGGGTCTGTG ATTCGATTTT 
    GTTTCTCCAG TCATGTTTGA TTGGGAAGAA GAAGAGGTAA GTTTCTTCTA 
    TTGCTATATA TACGAATTTT TATGTGGAAT CAGTATAATT CTGTTTTCTT 
    ATGGATTNGG TTAACGATCA GGTTTTGAAT CACTCATCCT GTAATTTATC 
    AGTCTCTAGT ATCATTGGTT CTTAAATATT TTAGTTTTGG NGGCTTGTTG 
    TTAATACTTG CTTTGTGCCT GATCCCTACT TGTTTTATGG TNTTAACCTA 
    CTTTTCAGCT TACTAATATG ATATGGGGNG ATGATGCTGA GACAGGCGAC 
    CATATTGTGC CTTTTAANGN NAGAAGNGAA CACCTTANCA AAAGGGAACA 
    GATNGAGGAA TCTAAGACAG CTGAGCAAAA AGATAACTGG GACTAAAATN 
    GACCTCCATG ATAAAATTTG GGGAGCAGGT CGAGCCATAA TGNTGNTGAG 
    GGGCTCCNNA GCCAGATTTC TGATGAGCTT ATGGGCCTGA CACGNNGNNT 
    AACTAAGCTN CAANGCNGAA AAAAATNGG

AT3G54500.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 183 Blast hits to 175 proteins in 44 species: Archae - 0; Bacteria - 4; Metazoa - 38; Fungi - 11; Plants - 120; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G54500.2

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 162 Blast hits to 160 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 11; Plants - 118; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G54500.3

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1).
Link
InterPro Scan - TAIR

AT3G54500.4

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.2).
Link
InterPro Scan - TAIR