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11-1107-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20693642 [Map]; Strand: c
      • AT1G55420.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1107-1 - 5-prime edge 
    CNTNNCANCC TCTGAGGTTC TTCNCGTCCA ATNCTACCAT GGCGATGTAT 
    CTATNATACC TAAATATTGG AGAGACAGCT CCGCTACAGA AGAATCTTCA 
    GATGAATCTG ATAAACCAAC TAACTATTGA GTATCTTGGA GACGTTAGTG 
    ATGATGACGG CGAGGACAGC CATTCTGATC ACGATCTTGG TGCTAGTGAA 
    GATGACGGCG AGGACAGCCA TTCTGATCAC GATCTTGGTG CTAGTGACGA 
    TGACGGCGAG GACAGCCATT CTGATCACGA TCTTGGTGCT AGAGACGATG 
    ATGGGAATGG CAATGGCGCT GGCGATGTTC ATGCTGATGG TGAGGCCTCT 
    TTATCCGATG GAAATCACCT AAAATGCAAA TGTTGTGGGG TTACTTTACA 
    AATGACATAT TATCATTGTT CTATCTGCAA GTTCAATCTT AACTTGGATT 
    GCTCGATGAG ACAACCACCT CCCATTATCT CACACTTGAA AAGTCATGAG 
    CACACCCTAA CCCTCTTNCC TATACNACTC CCTTTGCCAT GTGATGCTNG 
    NGGCTTGNNT CTAAACGACA CCNAANATAC NANCCCGGGC CGNCGACCAC 
    NCNTNCCNTN NAG

AT1G55420.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
embryo sac development arrest 11 (EDA11); FUNCTIONS IN: zinc ion binding; INVOLVED IN: megagametogenesis; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G55380.1); Has 31248 Blast hits to 2717 proteins in 273 species: Archae - 49; Bacteria - 26496; Metazoa - 873; Fungi - 230; Plants - 1563; Viruses - 57; Other Eukaryotes - 1980 (source: NCBI BLink).
Link
InterPro Scan - TAIR