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11-1192-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2007564 [Map]; Strand: c
      • AT1G06550.1 - [+] show detail - ATP-dependent caseinolytic (Clp) protease/crotonase family protein
        Distance: -374; Region: promoter
      • AT1G06560.1 - [+] show detail - NOL1/NOP2/sun family protein
        Distance: -51; Region: promoter
    Flanking Genome Sequence: 11-1192-1 - 5-prime edge 
    NGNATGAACN TTGNNCTGGG GNANAAACAA GGAGNGTTNG ACCTGCTCNT 
    AACTNGANAG ANNANATAGG ANCGTGGNGG GGNNGNNGAA CNCACTNCTN 
    AACAAGGANN GNATGGGNNT GNNGGNCAGG NNNAGANGAG ATNAANGGNG 
    CATGAGGAAN GNNACCANCC CNGGNCGGNC NNCNGGCGGG CNNGAANAAG 
    CCCATCTNAT NCAGAGCTTT AATGGTANAT GGGCCTTGGG TTGCAAAGAA 
    TAAGCCCATA TCATTCAGAG CTTTAATGAC AGATGGGCCT TGGGTTGCAA 
    TAAATAAGCC CATCACATTC NGAGCTTTAA TGGTNGATGG GCCTTAGGTT 
    GCAAAGAATA AGNGCATNNT ATTNATNTGC TNGGTNATNT ACTNTGATGN 
    AAGGNCTNTN TATANANNGG NCNNAAAAGG NNNNGNANAA GAAGCNNAAG 
    GGTNNGATGA GANGTNTNTN NCTACCNAAA CCCCCNNTCC GTGGGATGAA 
    TGATNACCNN AACCTGCCAT NTTNTNAANG ANNGGACNNA CNGGGCNANA 
    NANAANGGNN GNTGGNAANG GNGAGNNNNA NANCANAACG NAGAGCANTG 
    GNNNGGNNNN CNCNNTNTTT NTCGCAGNNG NGTTNAGAAG CNCTATAANN 
    CACTNNANCT TGAGAGANGN NNNNGGAANT GNTNAATNAN NGAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2012157 [Map]; Strand: c
      • AT1G06570.1 - [+] show detail - phytoene desaturation 1
        Distance: 0; Region: exon2 (CDS)
      • AT1G06570.2 - [+] show detail - phytoene desaturation 1
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 11-1192-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTC 
    CTACTCTCTG GATTATCTCT ATAAATATCG TCGGCCTATT AACACAATCA 
    TAAACAAGAG ATTGCTTAGT AAACTGTAAC ATGTTTATCA TCAAATGGAT 
    TGTTAGGGAA CTGTAACATG TGTTTGATTA AATGAACCTG TACCTGTCAC 
    CTAGTGGTTT TGTGAAGATT TGAAGCAACG TCCCTTGATC ATCTCTGTCT 
    ACAAGAATCC CTAATTCCTC ACACTCCTTG ATCTGATCAT CGCTGAGCAC 
    GTCGCCGACC CGTTTCTTGA GATTCTGGTA GTAAGTAGGC GGAGGAGAAG 
    GCATGAAGTC GAATCCTCCA ATACTGCTCC TCTTCCTCAT CTCTCTCAGG 
    GTCCTGAATA TGTCTTCACT CATCAGAGCC AGATGTTGTA GCCCTGCGCC 
    TTCGTTATGT TCCAAATACG TCTGAATCTG ACTCTTCCTC TTTGTTCCGT 
    GCACTGGCTC GTTAATCGGT AGAAGAACCA TTTCATCATT GCTAGCCAGG 
    ACCGCTGAAT TTAAACCGCT CTCGGCGGTT CCAACGTCGT CTGCTGTGAA 
    CTCTGCGAAT TGGTGAAAAC CANTGAACCC CGCTACATAA GTTAAAAGCC 
    CGGACCAAGC TCAGGAACGT TTCCCACGGC GTGGNCAAGC CGCCGGATAC 
    CATAATCCAN TGGGAACNAC NACGCNTCCT TTNCNCGCTC GAACCCTGGC 
    ANNAATTAC

AT1G06550.1

Model type
Protein coding
Short Description
ATP-dependent caseinolytic (Clp) protease/crotonase family protein
Computational Description
ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: 3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity; INVOLVED IN: response to karrikin, fatty acid beta-oxidation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: beta-hydroxyisobutyryl-CoA hydrolase 1 (TAIR:AT5G65940.1); Has 26566 Blast hits to 26556 proteins in 2155 species: Archae - 406; Bacteria - 18031; Metazoa - 1157; Fungi - 686; Plants - 463; Viruses - 0; Other Eukaryotes - 5823 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06560.1

Model type
Protein coding
Short Description
NOL1/NOP2/sun family protein
Computational Description
NOL1/NOP2/sun family protein; FUNCTIONS IN: methyltransferase activity, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26600.1); Has 13569 Blast hits to 8411 proteins in 2331 species: Archae - 604; Bacteria - 9970; Metazoa - 826; Fungi - 418; Plants - 360; Viruses - 0; Other Eukaryotes - 1391 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06570.1

Model type
Protein coding
Short Description
phytoene desaturation 1
Curator Summary
Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.
Computational Description
phytoene desaturation 1 (PDS1); CONTAINS InterPro DOMAIN/s: 4-hydroxyphenylpyruvate dioxygenase (InterPro:IPR005956), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); Has 2414 Blast hits to 2412 proteins in 817 species: Archae - 3; Bacteria - 1671; Metazoa - 206; Fungi - 158; Plants - 88; Viruses - 0; Other Eukaryotes - 288 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06570.2

Model type
Protein coding
Short Description
phytoene desaturation 1
Curator Summary
Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.
Computational Description
phytoene desaturation 1 (PDS1); CONTAINS InterPro DOMAIN/s: 4-hydroxyphenylpyruvate dioxygenase (InterPro:IPR005956), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); Has 2393 Blast hits to 2392 proteins in 824 species: Archae - 3; Bacteria - 1672; Metazoa - 205; Fungi - 157; Plants - 91; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).
Link
InterPro Scan - TAIR