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11-1198-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 871240 [Map]; Strand: c
      • AT1G03475.1 - [+] show detail - Coproporphyrinogen III oxidase
        Distance: -29; Region: promoter
      • AT1G03490.1 - [+] show detail - NAC domain containing protein 6
        Distance: -634; Region: promoter
    Flanking Genome Sequence: 11-1198-1 - 5-prime edge 
    CTGGATAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC ANGCTGGGAA GATCGTCNCC ATCNTCNNCT 
    NCNNNNCCAG GNCTCAAATN CNAATCNGGA TCAAACNTGG CTNCTCACTC 
    NGNNGACNTC TCCTNTCTTC TNCTACTTTC GNTCCNGTCT NCTATCATCG 
    NCTTCATTAT TCNCCCAATC CCTCTACTCT CAGATGCTCC CGTCCAATCA 
    GAAATAAACC TAATCTCGCC TTGCGATGTT CAGTCTCAAT TGAGAAAGAA 
    GTTCCCGAAA CTGAACGACC CTTTACTTTC CTTAGGGATT CTGATGACGT 
    CACTCCATCT TCTTCTTCTT CTTCTTCCGN CAGGGCTCGT TTCGAGACTA 
    TGATTAGGGC TGCTCAANAC AGTGNTTGTG ATGCAATTGA AGCTATANAA 
    GGCGGNCCTN NGTTAAAAGA AGANGTNAGG NCTCGACCTG GNGGTGGCGG 
    AGGAATCANA CGNGTGTNGN AGGACGGGGA AGGNCTCNTG AGAAAGATGG 
    TGGNGAGTGN NGGGGGGGGG NAANGGGGGG GNNAGNCNAN GGANAGCGTN 
    GGGANAGGGG GGGNGGANNN TACNGANNNN GTGCGGNNNN GTAANGGGNN 
    GGTNANNGAN GGGGGNGNGN GGNGAGGGGA GNCNCNGNNN NGGNNGANNN 
    GNNGTNGAGN NTNGACGGNG GAACNNGGNN NNGNNNGGGA GAGNNGNGAG 
    GGGGTANCGG GGNANAGAAN GNGAGNCNNG A

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 871228 [Map]; Strand: c
      • AT1G03475.1 - [+] show detail - Coproporphyrinogen III oxidase
        Distance: -17; Region: promoter
      • AT1G03490.1 - [+] show detail - NAC domain containing protein 6
        Distance: -646; Region: promoter
    Flanking Genome Sequence: 11-1198-1 - 3-prime edge 
    TTGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTATTTAAAT GATAAGAAGT CTTCGTCGTC CACTGATTTT GACCGCTCTT 
    CCTTTTTATT TAACAGCTCA AGGTAAAAGA AAAACACAGT TCCAGTCTTC 
    TCAGACTAAA CCACTTCTGA ATTATTTAGC CGAAACCAAA CCAGACACNG 
    AAATTAAAAT TGCGGTTTAA TTTGGTCGAA CCGAAGATAT TGATACACAA 
    TAGGCTCTTA TCCTTCTTAA CGGGCTTAAT TGCCCAAATT AGGCCCAAAA 
    CGATTAGCCG GTTTACGGCA CTATGCTATT TTGATGTGGA TAAATCATGG 
    TCATGTAATA TATCTTTATC TATCGTTAGA ATCTGTGATA AACAAAACAA 
    AAGTGTATTA TAGATTCGAA TCCTATCTAA TTATTATTTC AAATAACCAA 
    ATAGATGTAA TTACAACCGT CTTATTCTTT CCAAAAAATA GTTAATCGCT 
    GACAAAAGAA AATCCGGTTG GGCCCATCAC GTTGTCTATA TATTCATGAT 
    CATATAGAGA GTTCAGCCGC TTGACCTGCN GAGGAATT

AT1G03475.1

Model type
Protein coding
Short Description
Coproporphyrinogen III oxidase
Curator Summary
Encodes coproporphyrinogen III oxidase, a key enzyme in the biosynthetic pathway of chlorophyll and heme, a tetrapyrrole pathway. Mutants express cytological and molecular markers associated with the defense responses, usually activated by pathogen infection.
Computational Description
LESION INITIATION 2 (LIN2); FUNCTIONS IN: coproporphyrinogen oxidase activity; INVOLVED IN: tetrapyrrole biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Coproporphyrinogen III oxidase (InterPro:IPR001260), Coproporphyrinogen III oxidase, conserved site (InterPro:IPR018375); BEST Arabidopsis thaliana protein match is: Coproporphyrinogen III oxidase (TAIR:AT4G03205.1); Has 4884 Blast hits to 4875 proteins in 1228 species: Archae - 0; Bacteria - 2144; Metazoa - 115; Fungi - 160; Plants - 86; Viruses - 0; Other Eukaryotes - 2379 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G03490.1

Model type
Protein coding
Short Description
NAC domain containing protein 6
Computational Description
NAC domain containing protein 6 (NAC006); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: TCV-interacting protein (TAIR:AT5G24590.2); Has 1772 Blast hits to 1529 proteins in 129 species: Archae - 0; Bacteria - 33; Metazoa - 146; Fungi - 22; Plants - 1047; Viruses - 89; Other Eukaryotes - 435 (source: NCBI BLink).
Link
InterPro Scan - TAIR