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11-1208-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23107925 [Map]; Strand: c
      • AT3G62470.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    2. Chromosome: 3; Position: 23134839 [Map]; Strand: c
      • AT3G62540.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1208-1 - 3-prime edge 
    TTCCTAGCAT GTCGAAAACG TTCTAAAACC TCAACGATGA GATCATGTGA 
    TAAATCTAGT TTCATTTCAT CAAGAACAGC TTCCATATTT CTATCTAACG 
    CAAACAATTC ATCAATCACT TTGCAGACTC TCTCTACTTC TTCCGGATTA 
    GTACNTTGAT TCAACACAAC TGACCCCAGT TTCTTCATCA TTATCGCATT 
    CAGATTCAAC TTCTTCATCA CATCCATCAC TAACATTAGA ACTACCACTA 
    GAGAAACCTC TACACCCAAG ACTCGCATCA AGCAGTTGTA CAGAGGAGTG 
    TGGCAATGGA ATTTGACGGT AAGGATGATA AGTAGAAGAA TGAATCATAC 
    GAGAGAAGAG AGCACCGGAA AATCGTACTT CCTCTTCTCC TCTCCCGCCG 
    ATTACGCGGC TTTGACTGGA AATGAATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4793341 [Map]; Strand: c
      • AT5G14820.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1208-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATTTTC CTGCATTTAG GTTCTTCTGT TGGGCTGCAG 
    AGAGACAAGG ATTTGCTCAT GACTCAAGAA CATATAACTC CATGATGAGT 
    ATTTTAGCAA AGACTAGACA GTTCGAGACG ATGGTTTCGG TACTCGAAGA 
    GATGGGTACG AAAGGTCTAT TGACGATGGA GACATTCACT ATCGCGATGA 
    AAGCT

AT3G62470.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 39079 Blast hits to 12185 proteins in 290 species: Archae - 4; Bacteria - 32; Metazoa - 449; Fungi - 607; Plants - 36694; Viruses - 0; Other Eukaryotes - 1293 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62540.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G14820.1); Has 36772 Blast hits to 11783 proteins in 282 species: Archae - 3; Bacteria - 24; Metazoa - 449; Fungi - 549; Plants - 34543; Viruses - 0; Other Eukaryotes - 1204 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14820.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 37965 Blast hits to 11999 proteins in 283 species: Archae - 3; Bacteria - 24; Metazoa - 443; Fungi - 549; Plants - 35727; Viruses - 0; Other Eukaryotes - 1219 (source: NCBI BLink).
Link
InterPro Scan - TAIR