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Mutant Lines
11-1222-1

11-1222-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 4; Position: 17966776 [Map]; Strand: w
- AT4G38350.1 - [+] show detail - Patched family protein
  Distance: 0; Region: intron1 (CDS)
- AT4G38350.2 - [+] show detail - Patched family protein
  Distance: 0; Region: intron1 (CDS)
- AT4G38360.1 - [+] show detail - Protein of unknown function (DUF300)
  Distance: -331; Region: promoter
- AT4G38360.2 - [+] show detail - Protein of unknown function (DUF300)
  Distance: -331; Region: promoter

CTTNGATAAA ACTAACAAAA TCGGTTATAC GATAACGGTC GGTACGGGAT 
TTTCCCATCC TACTTTCATG TCATTGCTGT GGTAATTCCT TTCTGCAGCG 
TTTAAAGCTC AAGGCTCATC TGTCAACAAA CATAAGACAC ATTGCTCATG 
GAGAGGAGCC ACTTGCTACA TCTTCATTAT TCTTAGAAAA TTCTATTGCG 
TCTTCATCCT GTTAATACAC AAAAATAAGT CAGTTTTGGA TAAATAAATA 
CATATAGAAG AACATGAATT GATATGCAGG GAGTATAAAT AAATACATAT 
AGGAGAACAT GAATCTGTGA ACTAACACGG CTGGGAGCTA GGCAGCTAGC 
AGCTAGCGCC TAACAGCTGG GAGCCTAACA GCTAGCAGCT AGCAGCCAAT 
CAAAACAAGG CGACAAGGCG CATGCAGTGA GATCAAAAAT CTGTTAATGC 
CAATTGCAGA CGTGAGCTCG TCTGATCAAA TCCTCCTTGG CTTCTCTTCG 
TTTTCTCCAA TCCATTTCTT TGTTTATACC AAACTTCATG TCATTAGGTC 
CTCCGATCAT TCTTCGAATC GGTTTTTGTG TGGCGGATC

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 17967104 [Map]; Strand: w
  - AT4G38350.1 - [+] show detail - Patched family protein
    Distance: -142; Region: promoter
  - AT4G38350.2 - [+] show detail - Patched family protein
    Distance: -142; Region: promoter
  - AT4G38360.1 - [+] show detail - Protein of unknown function (DUF300)
    Distance: -3; Region: promoter
  - AT4G38360.2 - [+] show detail - Protein of unknown function (DUF300)
    Distance: -3; Region: promoter
Flanking Genome Sequence: 11-1222-1 - 3-prime edge
```
GGACGACCCA TGAGAGGATG ATGAGAAAAA ACAAACAAGA CAAAAGAGAT 
GCCTTTTTTT CATCTAACTT TGATGGTAAA AGAAAACGTA AAAACGGCAT 
GCATTGCAAT TGTTAGCATT TAAAACGGCA AGCAGATGTT ACTGGTACTG 
ACTCATCATC ACCGTCCTCC TCTTGCCTCG TGTCTCCCGA CTCTCCTTAC 
TTTACTCTCC AATTCAATTT TAGTCAACAA TCCAATCTCT CTGCAACTAA 
CTACTACGCC AAGATTAAAT AAACCCCAAC TGCTTGCTTA ATTGCTCTTC 
AGACAAAACA TGGCGATTCC TACCAAGCT
```

AT4G38350.1

Model type: Protein coding
Short Description: Patched family protein
Computational Description: Patched family protein; FUNCTIONS IN: hedgehog receptor activity; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Niemann-Pick C type protein (InterPro:IPR004765), Patched (InterPro:IPR003392), Sterol-sensing 5TM box (InterPro:IPR000731); BEST Arabidopsis thaliana protein match is: Patched family protein (TAIR:AT1G42470.1); Has 3325 Blast hits to 2735 proteins in 472 species: Archae - 80; Bacteria - 454; Metazoa - 1756; Fungi - 181; Plants - 170; Viruses - 0; Other Eukaryotes - 684 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38350.2

Model type: Protein coding
Short Description: Patched family protein
Computational Description: Patched family protein; FUNCTIONS IN: hedgehog receptor activity; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Niemann-Pick C type protein (InterPro:IPR004765), Patched (InterPro:IPR003392), Sterol-sensing 5TM box (InterPro:IPR000731); BEST Arabidopsis thaliana protein match is: Patched family protein (TAIR:AT1G42470.1).
Link: InterPro Scan - TAIR

AT4G38360.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF300)
Computational Description: Protein of unknown function (DUF300); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT1G77220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38360.2

Model type: Protein coding
Short Description: Protein of unknown function (DUF300)
Computational Description: Protein of unknown function (DUF300); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT1G77220.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR