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11-1234-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 94277 [Map]; Strand: c
      • AT2G01130.1 - [+] show detail - DEA(D/H)-box RNA helicase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-1234-1 - 3-prime edge 
    ATCAAAATCC CGTCTATCTT TTTTCTCCCT GGAAATAACT TCTTGCTTTA 
    AAGAATCTTT CAAAAGCATT GAAAATCTCT TATTCCAATC ATCCAAGTCG 
    GCACAGTGAA AGGTACCCTC CTGCTGCAAA TTGATATGGT TCCAGTAGAA 
    AGATAAAGGG ATTTTTATAA AATACTACTC GAGAGCAAAT CGAAAACTAT 
    GAATCGCCAT TGTAAGAGCA TCAATCAATA AGCTCAGAGA TGCATGAAAA 
    AAAGATGAAG AAGAAGTTAA CCGGTTGGCG ATCCTCGGAA ACGCGGTCAT 
    CATAAGCGGA GACATAGCGA ACTGGAGAGA GAGGAACAGG ATTGAAGCCG 
    TAATCGGAAC CAAGGCACTG GTGAGGCGGA ACGTACAGCG AAGGAGGAAG 
    ACGATTCGTC ATCGGAGCCA AATTCAAAAC TCTAAACTCT CTCTACTGTA 
    AGTCAAAAGT AANCTATAAA GAGGGAGAGA GATC

AT2G01130.1

Model type
Protein coding
Short Description
DEA(D/H)-box RNA helicase family protein
Computational Description
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G48650.2); Has 13137 Blast hits to 8990 proteins in 1526 species: Archae - 10; Bacteria - 5358; Metazoa - 2929; Fungi - 1766; Plants - 978; Viruses - 93; Other Eukaryotes - 2003 (source: NCBI BLink).
Link
InterPro Scan - TAIR