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11-1264-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4214301 [Map]; Strand: c
      • AT1G12380.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 11-1264-1 - 3-prime edge 
    GACAAGGACA AGAAACTGAA ATAGACACAT ATGTTATATC GAAAAATTAT 
    GATGGTATAT TATATAGACT AAAGAAATAC AAATACTCTC AATCACCTTC 
    TAAAGAAACC AAGTACAAAT TGAATATTAA TGATAGTATG AATGAGATAC 
    TAGTAAATCA AAGAAATGAA TTTAAACAAT CCTAAAGAAA TGCCAAATTC 
    TAATGAAAAA CTAAGGTGAA ATCAAATTGA TCAAAAAAGA GATTCAAATG 
    TCACACTGAG GATGTATCGA CAAGAACATC GTTTAGCATA TGGTCGGCAC 
    CATTAGCCAT AGCGAGAAGC TCTGCATCCC TATCCTCCTC GTTTGAGAAA 
    TCTCTCCTTT CGAATTTCGA GTTAGCGGAT ATGAAGATCA GCTTTTGAGC 
    TCGATCAACG GCTGCATGTG ACCGCCCGTT CGAGTTTACC CATTTCAAAA 
    GAGAGGAGTT GCATTTGAAC CCTCCAGTCG TAGCGTGGAG GAAAATGAGC 
    CTTACTGCAA CTTTTCCTAG TGACCTGAAC TCGCTAAGAT ACGTCTCCCA 
    AACAAGTCTA CTGCTTTGAG GATTCGCTAT CCTCATCTTT CCGGAAACCG 
    GATCACGCTC TTTCATTTGG ACCGCCCTTG CATACATAGG ATCAAGCCCT 
    TCGGTTCTCC ATTTCATTAG TTCCATCAAC GCAATGTGTG CCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4214185 [Map]; Strand: c
      • AT1G12370.1 - [+] show detail - photolyase 1
        Distance: -5234; Region: intergenic
      • AT1G12380.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 77; Region: intergenic
    Flanking Genome Sequence: 11-1264-1 - 5-prime edge 
    TCCTTGTCAT CGATGTATCG GTTAGAAGTT AGAAACTCTA ATTAATGACA 
    GCTTTTGCTT CTTCGTCTCT TGGTACAATA GTGTAATGAT CCCACTCGCT 
    TTTTTCATCG GAAATTCATA TTCTTAATCA TGACTTGAAA ACATATCTTT 
    ACTTTTCGAG AGAAAATGAC TTAACTTTTG AAAGTTTAAT GTTCTTTCTT 
    CATGATAACG TTTGTTGTTG GCAATGACAG ACTAAAGATG CATATACTTT 
    TGATATCTTG AGTTATTGAA GAACAAAACC TGATTAACGG GTTTCAATTT 
    AATTTCAACC ATGATTATGA TTATGAGATT ATCTATCTAT ATCAATCTAT 
    TAAGTCTTTT AGAAGAACAA AAATGTGGAT C

AT1G12370.1

Model type
Protein coding
Short Description
photolyase 1
Curator Summary
encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele
Computational Description
photolyase 1 (PHR1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), DNA photolyase, class 2 (InterPro:IPR008148); Has 1792 Blast hits to 1788 proteins in 474 species: Archae - 23; Bacteria - 644; Metazoa - 122; Fungi - 53; Plants - 107; Viruses - 39; Other Eukaryotes - 804 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G12380.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR