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11-1349-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7128864 [Map]; Strand: c
      • AT1G20575.1 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: -119; Region: promoter
      • AT1G20580.1 - [+] show detail - Small nuclear ribonucleoprotein family protein
        Distance: -20; Region: promoter
    Flanking Genome Sequence: 11-1349-1 - 5-prime edge 
    TCTGCAACCT AGAAAGAAAA AAATGGCGGA AGGAAAGAAG AGCGACTCAG 
    ATGCGATTGA CGAGTTTACC TCTTTTAAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7128980 [Map]; Strand: c
      • AT1G20575.1 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: -235; Region: promoter
      • AT1G20580.1 - [+] show detail - Small nuclear ribonucleoprotein family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1349-1 - 3-prime edge 
    GTTGCAGAGT TAAAGGAGAA GGTTTTCAAT TAGGGTTTTG TAGAGAGAAA 
    GATGAGCCGA AGTTTGGGAA TACCGGTGAA GCT

AT1G20575.1

Model type
Protein coding
Short Description
Nucleotide-diphospho-sugar transferases superfamily protein
Computational Description
Nucleotide-diphospho-sugar transferases superfamily protein; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT2G39630.1); Has 22705 Blast hits to 22656 proteins in 2589 species: Archae - 933; Bacteria - 16103; Metazoa - 288; Fungi - 260; Plants - 98; Viruses - 23; Other Eukaryotes - 5000 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G20580.1

Model type
Protein coding
Short Description
Small nuclear ribonucleoprotein family protein
Computational Description
Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: snRNP core protein SMD3 (TAIR:AT1G76300.1); Has 1253 Blast hits to 1253 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 480; Fungi - 336; Plants - 223; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).
Link
InterPro Scan - TAIR