1. Home
  2. Mutant Lines
  3. 11-1378-1

11-1378-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5763402 [Map]; Strand: c
      • AT1G16840.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron1 (CDS)
      • AT1G16840.2 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (3UTR)
      • AT1G16840.3 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron1 (CDS)
      • AT1G16840.4 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-1378-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATTTAT TGCTATGTCA ATCCTAAAGT TAGTCATTGC 
    TCGATGCTGT TACAGGTTCT GAATGGGAGA TCATTAATAT GTGATTAACA 
    TTTTTGAGAA TCTTTAATCA TATAGGCAGT ACTAGCNGTC TTTGGTGGAA 
    CAGGTTCTTA ACTAGTTGTG GTGTATGAGA ATTGTTTGAT TGTTGGTCAT 
    TCGTTGACAT ATGGTTTTTG TTTATTGGGT TTAGGTGTTC AACCTCAATT 
    GATGGAGACC AAGACCGAGA CAACTTCAAA TTCCGAGTCT CACTCTGAGG 
    ACGAGGAAGT GTAAAAATGA CACTGCTTGT TTGGGTGAGT TATTTGGCAA 
    AACTAAAGTT ATGACCTTGA TGGATTGAGC AAATCACATT TCTATCTATA 
    TCCATGAATC CTCAAGGTCT TATGATTTTG TTGGGTTTCT GATAAAAGAA 
    AGATTGAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4954093 [Map]; Strand: w
      • AT1G14470.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1378-1 - 3-prime edge 
    TTTAAAACNG NAGAGGTATT TTATCGACCG TTACCGACCG TTTTCATCCN 
    TANCNNNCCN CGTACGTNCN GATCACNNTC TCTGGGCTCG TCTAACTCNN 
    NGCCCTGCGT TTCGTATTCA AGTGGAAGAA GATTTTTTAA AAAAATATTT 
    GAGTTTATAA CNTGAACATA GATAAGCTCG TTAAGGCCCA TTATTTAGTA 
    TTAGGCCCAT TAAATGTAGG ACGATTGGNT AATGTAACAA CAACATTAAG 
    CACATTAATC AATTGGTTAA TCATTTTTAN NAAGGTCGTA TTAATTATTG 
    AATNAATAAA GTATCACTAA TAGTTAATCA TGATATTTNN ATAGGATATG 
    TACATACNTN TGNNCTTCTA GTGCAAAAAA GAACAGGACN ATCTATGANA 
    TNATAAANNA NGCGNNNTGA CNNGCANGTC NNANNACGGG TNTNNTNTNN 
    NTGANTTCGN NNTNTTTNTT NNNGNNNNNN NGGNTNACNT GGTNTGGATN 
    ANNNCGANTN GAGANNAGGG GTCGAANNCC AATAAANAAA ACTGCGCNTN 
    CATAAANNGA GAGNGNGTCT NNGTTTATAN TGNNGNGNGT GANTTCGNNT 
    NGGAAGANNG NTATNGTGTN NGCNGNGGNN AGNNAAANNG ANNGAAAANA 
    AGAGACNAGC ANANNCTGNN AGNTTGTNNC CTTANNCTGC TTNNGGTCNN 
    NTANNCTTAA TTNGGNAAGG CNGNNATGAN ANAGGGNGTC TNNGNNGGTT 
    TATNNGTGNN CCGTACNGTA TNTNNTTNTG TTNTNGNNGA TNNGATNAGN 
    GNGTGGNNGA GTACTNNG

AT1G14470.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G08070.1); Has 45588 Blast hits to 14013 proteins in 255 species: Archae - 1; Bacteria - 22; Metazoa - 282; Fungi - 244; Plants - 44188; Viruses - 0; Other Eukaryotes - 851 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16840.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16840.2

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16840.3

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16840.4

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR