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11-1396-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage
Phenotype
vascular leaf (PO:0009025)
  • wrinkled (PATO:0001810)
    (Leaves::rough surface)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3510697 [Map]; Strand: w
      • AT5G11060.1 - [+] show detail - KNOTTED1-like homeobox gene 4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1396-1 - 5-prime edge
    CTCACGATCC TCATCCTTCC TCCAACGAGG CAACACCGCA AACAACAACA 
    ACAACGAAAC ATCCGGTGAC GTCATCGAAG ACGTTCCCGG CGGAGAGGAG
    TCAATGATCG GAGAGAAGAA GGAGGCGGAG AGGTGGCAGA ATGCGAGACA
    CAAGGCGGAG ATACTGTCTC ATCCACTATA CGAGCAACTT TTGTCGGCAC
    ACGTGGCGTG CCTGAGGATC GCAACGCCGG TGGATCAGCT TCCGAGGATA
    GACGCACAGC TTGCTCAGTC TCAAAACGTC GTGGCTAAGT ACTCAACTTT
    AGAAGCCGCT CAAGGACTCC TCGCCGGCGA TGACAAGGAG CTTGACCACT
    TCATGGTAAC TTAACTTCTC TTTCCTTCTT ACCACTCTCA ATTCCCATTA
    TTTTATTCCT TTTCTTTTCT TTTGGAAAAT AAAATCATTA AAAATTATTT
    TCGTCTTTTA TATTTAAAAC GGTTTGACAA ATTTGAATAT TTTGTTGTTA
    ATTATCTCCA AATTTATAAA AATAAATTAG AGAAGAAAAT CAAAAATTCT
    TTCTAGACTT GTACTTTGCA CCGACAGACA TGATCAGTGG GTTGGATAAA
    TCGTCAGTTA AAAATTTGGA TATTAGTTTT GCACAGTAGT AATTTGACAG
    CATAAGGTTT ATTTTGAGAT ANATTTTTGC TGAGTGTAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3510636 [Map]; Strand: w
      • AT5G11060.1 - [+] show detail - KNOTTED1-like homeobox gene 4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1396-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT NNACCNACCG TNTCCGACCG TCCTTCATCC 
    CTNNTNGTGC AGAGCCACCT GGTTAGCGGC CGCGGGNCGA AGGAGANTCG
    GAGCTTGTAG CGGCGGCAGA GGCAGCTGTG TGGAGATTGA GGAAGTTGTT
    GTCGGAGCGG AGGAGCCAAT TAGGGGGTGC TGATTCTTGA AAATGTTGTT
    GCCTGCNTGC CTGTTGCNGG CGGAGGAGGA GGCNTGATGT TGTTGTTGGT
    CGGTGAAATG ATTAAAGTGA TTGTTATGAA ACGCCATCGT TTTCGTGTTG
    AATTTGTTTT TGAATTTCTG TTTCGGAGAG GGAAAGATGA ATTAAGAAGA
    AAAAAAGAAG AGAAATTCTT AGCTTTGATG TTCAGATTTA TCAATCAATT
    ATAGAAACTT TCTTCTCTAA AACAGAAAGA AAATGAAATA TAAGGGTTTC
    GATGTGTATG TGTGTTTGAC GGTTTGAATT TTATATGTAG CTTACACCAA
    AAAAGACGAT TTATTCCTAT ATTTATTCTT CTTCTTTTAT TATTAAATTG
    TAGAGTACCA GCTTTTTGGT GATCCATAAT AAATTGGGAT TAGGTCAGAT
    TACTAACATT TACTGCGACA ACAAAAAGTT TTATCGTTTT ACAAAAAAAA
    NANATGGTAN AAGTTGACGG CAAAAGAATG ATACGAATTC CNAAGTGACN
    GTAAAAGGGA AATAGCTGCA TCACTTTTTT CTTCNTTCGT NCCTAACATT
    TTTTCTGCTT ATCAAAAA

AT5G11060.1

Model type
Protein coding
Short Description
KNOTTED1-like homeobox gene 4
Curator Summary
A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root.
Computational Description
KNOTTED1-like homeobox gene 4 (KNAT4); FUNCTIONS IN: transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to light stimulus; LOCATED IN: cytosol, nucleus, cytoplasm; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539), KNOX1 (InterPro:IPR005540), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), KNOX2 (InterPro:IPR005541), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 3 (TAIR:AT5G25220.1); Has 5905 Blast hits to 5890 proteins in 326 species: Archae - 0; Bacteria - 0; Metazoa - 2030; Fungi - 312; Plants - 3367; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).
Link
InterPro Scan - TAIR