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11-1458-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 555920 [Map]; Strand: w
      • AT2G02160.1 - [+] show detail - CCCH-type zinc finger family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-1458-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGCA GGCGCAAACA 
    TTATTATTAC TTGGAAATTT CTGAATCTCT CTTTCAAGTA GATCGCAAGG 
    TTTCAGATCG AAACCCTAGG AAGATCGAAA ATCACCGATT CAGAGAGAGT 
    CCCGTGGAAG AAGAAGAAGA AGACGAGCCG CCACAAAGAG CGCACCAGAG 
    AGAAACTCGC GACTGTGTGT GTGTGCCCTT TAAAGCTAAG CCTAAAAGTT 
    TTTTTTTNGG CTNTTTTTTT TTNTTNNGGG NGGGGAAATN TCAATANATN 
    ANGTNNGGTT TTTTTGTAAT CAATNAAATC CTGNCCCGGG GGGNTTTNTT 
    NTGGGTTTNT TNGTNACCCN TNTNGNTGNC CTTGNTNTTA NANCTTNNGN 
    GGGACCCNNC NNNTTTGGAN NGTNGGNAAA NAANCANNGN TNGGGGGNTT 
    TAANCCGANN TTGACCCAAA NTNGTAANCC GNTGGGGNNA TTTTTTNCAA 
    TNAANCTTNG GCGGGGAATT NTNCCCAAAA AAATTCCNNC CCAAANTCAA 
    ANCTTGGGTT TTNANTTNGG AANGGACTTT TTGACCCGNN TNTTTNAAAA 
    NTNTTTCAAA CCCAANTTTN GAAAATTTAC ANNNCNCCTN NAAANTCNCA 
    AAAAANANNT TTTTAAANTT NNNNNNNNNG NCNNNNCCCC CNNCCCCCCN 
    C

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 555831 [Map]; Strand: w
      • AT2G02160.1 - [+] show detail - CCCH-type zinc finger family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1458-1 - 3-prime edge 
    CTCAACCGCA ACAGCAACAT GAGCAGAAGA AGCAATCAGA GACTGTTTCA 
    TCTGCTGAAG AAGATGCTTT GAAGTGGAAC ACCGATTGCG TTTACTTTCT 
    CGCTTCTCCT TTAACCTGCA AGAAGGTAAT TGATTTTTGA TTATTGTTTC 
    GCTTAGATCT TATCCAGTTT CTGCTTCAAT TAGGGTTTTG GATTTGAGAT 
    CTCAAGTTTC TTTCACCCGA TTTCAAGTTT CTCTGTGTTT TTGTGTCCCT 
    CGAAGCTATC TATACATACT TCACTTCTCC ATCTGCTTAA TTTTGGTGCG 
    AGATTTAGAT CTGGTGATTT CGAACCTCGT GATTCTAAGT ATTGTTGTTT 
    CTTAGGGCTT CTTGTTAGCT AGATTGAAAA TTACATATAC AAAGCT

AT2G02160.1

Model type
Protein coding
Short Description
CCCH-type zinc finger family protein
Computational Description
CCCH-type zinc finger family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 10885 Blast hits to 7444 proteins in 511 species: Archae - 23; Bacteria - 415; Metazoa - 5228; Fungi - 922; Plants - 581; Viruses - 184; Other Eukaryotes - 3532 (source: NCBI BLink).
Link
InterPro Scan - TAIR