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11-1476-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 71272 [Map]; Strand: c
      • AT1G01150.1 - [+] show detail - Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-1476-1 - 5-prime edge 
    GTTGCAGCTG CGAAGACCCT TGTTCAATAT GGATGTAGTG AGCTGAGGAG 
    TGGAGATATA GTCATGACGA GAGAAAACAG TCAACTAGAG AATGGTTCTG 
    ATAATTCACT ACCAATGCAA CTACATGAGA ACCTTCATCA ATTACAAGAA 
    CTGGTCAAGC ACCTTAAGGC TCGAAATTCC CAGTTAGACG AGTCAACAGA 
    TCAATTCATT GATATGGAGA AATCTTGCGG AGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 71336 [Map]; Strand: c
      • AT1G01150.1 - [+] show detail - Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-1476-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCGT 
    GAGCTGCAAC ACCCCTTGTT CTCAAAGCCG TGGATCTAGT AGCTTGCTCC 
    TTAAACCAAC AATAGGGACA GTAAAAGGTT GCAGGATCTT CACAATCAAG 
    CTCAACACAC TTCCTGTGAA CAGCGAGAGG GCATTCATTC CCAGAACAAG 
    GTACTACACC ATCGTCTGCA ATATCGCATA CAATACATGC GTGTTCGTTC 
    AACGGCTCAA AGCT

AT1G01150.1

Model type
Protein coding
Short Description
Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Computational Description
Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: TRF-like 10 (TAIR:AT5G03780.1); Has 94 Blast hits to 77 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR